Crip002940.1
Basic Information
- Insect
- Chironomus riparius
- Gene Symbol
- -
- Assembly
- GCA_001014505.1
- Location
- JXPV01014501.1:3977-11667[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0014 0.087 13.4 0.7 1 23 1041 1064 1041 1064 0.95 2 13 0.0042 0.25 11.9 1.3 1 23 1176 1198 1176 1198 0.97 3 13 0.0061 0.37 11.4 3.7 2 23 1201 1222 1201 1222 0.97 4 13 0.013 0.77 10.4 1.6 1 23 1228 1250 1228 1250 0.96 5 13 4.5e-05 0.0027 18.2 1.4 2 23 1257 1279 1256 1279 0.95 6 13 0.0086 0.52 11.0 0.1 5 23 1292 1310 1290 1310 0.97 7 13 3.2e-05 0.0019 18.6 2.6 2 23 1316 1338 1315 1338 0.95 8 13 0.14 8.5 7.1 0.3 3 23 1352 1371 1350 1371 0.96 9 13 0.00032 0.019 15.5 3.4 1 20 1378 1397 1378 1400 0.92 10 13 0.00039 0.024 15.2 0.2 1 23 1408 1430 1408 1430 0.98 11 13 9.7e-06 0.00058 20.2 2.3 1 23 1436 1458 1436 1458 0.97 12 13 5.4e-05 0.0033 17.9 3.9 1 23 1464 1486 1464 1486 0.98 13 13 0.0028 0.17 12.5 4.6 1 23 1492 1514 1492 1515 0.96
Sequence Information
- Coding Sequence
- ATGGAGCAACAACAATGTCCGATTTGTATGCTTTATTTATTGCCCGGAATGTGTCTACAAGATCATTTAGATACCCATCCGAAGGATATGATAATCAAGGCTCTACTCTCAGTTAAGACAGAACCACCTAAACAACAAACGCCTGTGAGTAATTCTAATGAAATGGCTGCGACAACAGTTTATCTCACAACACCATTTAATTCATCACAAACCCACATatatcaacaacaaaatcagcagcagcaacaacaacaacaaaatcagaCACCTATTCAAAATAGTAATTTCGCTCTTGCAAAAAGAAATACTGGCAATAATGCAGTTCTTCTTGGTAATCGTCCATATCGATTAACACTCGATACGCAGCAAGCAGCAGCCAACATTTCTCCGCCAACAACCACGACCTTCCTCAATGCAACAGCTGTAACACCCAATCATAGTTACGGAAGACGAGtgacaaatgaaaatgatttatttgctAGTGATAATAACAAAACGGCATTTCGGTGTATCCAACAAAATACAGAgcagaaaaatattatgattgtAAATACGAGTAGCacacaattttccattcaacaaACAGTTCCTGTCAaaaaacagcagcagcagcaacagcatgGACAAACATCAACTGCCATAGAACTACATCCCGTCATCATGGACAATTCCACATTATCAAATTCAGTTCCAAATGCAATATCAATAATTCCACGCTACACAAGCGAGAAATATTCTGGACCACCACCTTCATACGAATCTTCAGTCACCAATACAATAAATGATAAGCCACGAGTCATTGATCTCACACAAACACCCACAAATACAGCAATGAAAATGATGGAGAAACAATGTATTGTCGGCAACggcaacaacaataacaacaataacaaactGACGACCTTGAGCAGCAACGGCGCAGATGAGAATCGTCACTTAATGTTAACGTCGGcaccacaaaaaattcttgaatacACACAAACGGAAAATGGCGATTATATGATAACCGAAAAACTCCTATCGACTACCCATCACCACAATCAGCATCATCAGAATCAGCATCAACAATCCACAAACTCCCACAATATGTCACATGAAGAGGAAATCATAGAAGAAATTCATGATTCAGACGATAATAGCTATAATGTAAAGTACGTCGAGATTAATGAACCgctaacatttaatttatcatcgAGTGATAACAACAGTGGGAAATATCATCAGGAAGAACATTATACAGTAATTGAAGAATCGGAAGTGGAGCAAATTAATAGTTTCAATGAATCTCAAGGATCaagttcaaatattgaaagtcATGCACCTAGAAAATCTGGTGTTAAAGTCATTAGCAATGTTAAGTTGACATCAGCTGAAATGCTTTCACCGACTATAAAAGATATCATTAaacaatataataataataatgcaagCAGTActagtaaaaataataataataataataatagtaataataataaaacacaGACTGAAAAAGAAATGCAAATTGAACAACCGGTTGTGGACATTGTTCATACTGAAATCACTGACACAGAGGATGATGACGACTATGatgttgaaatgaaagaagatatgaataaaaatgatacaaaGGCTTTAATTCAATGCACTGAGACGTTGAATCTTAGCAGCAATGATAAGGAAGAGGCTTCAAGTTCTAGTTCTAGTGCATGCACGACAAGTGTAATAAGGAAAACAGCAACAACGATAAGTTTAGACGCTATTCCATCGACATCAAAAGCCCAAGATGAAAGTAAGGAGCAAAAGCTCAAGAATGAGCCCGAGCCTAGCACATCGAGTGAGAGCTTGCGGAAATCTTCTTCTACTAATGTTGTGTTCAATTCTACAAATAGACTgaagcaaaaagaaatttataagcAACCAAAAAAGTTAGTGGTAAAGTTAAAGAAACCTCTTCAGGAAGGTGGCGAATGTACGTCATCGATATCGAGTGTCACCATTCAAACTGTTGCTGCAAATGCTGATAACAAAGACACCACacaaataaagaatgaaaatatggAACGTGAAACAATTACAACAACTCAGTTACACGATCATGATGACGAAAATGTCGATATACAGAAACATAGTGCAATGACCGAACGTGACTCGACAGTGTTCAAGGTTGAGAGCAATGAACAATTCACAGTAACATTTCTTGATCAGCACGATTATGAGCCAATAAAAAAGATTACAGTAACACCTGAAATTCATCATGACTCGGAGACAAATCAATCTGTAATGAGTATGGAACTTGAGCCTGAAACAACGAGCGTCGCTGTGAAAAGAGAACAAACTGATAATGAATTGCCGATTATTGTAAAGACCGAAATGAGTTCATGCAGTGCATCCTCAATGGCATCAAACAGTCAGAGCAGTTCGTGCTCACGAAGTCCCGCAAGaataaatatagaaaatgtCTCTTCAATTAACATCAATGAGAGTTCACCAATCaactttttatatcaaaatgatCGTGTCCGATTTTCACCTCCGCTATCTCCATACGTCTATATGAAAACATTTTCGACAAGCGAAGATCAACCGAAGCAAGAGACAGATGCGTCATGGAATAATAGTAGCAGTGTCGTAACACAAAATTCCGATCAGAATTCAACATGTTCACGTTATACGCCATCGTTTGATGATAATAGAAGTAATTATACAGAcattgatgtaaatttaaagaCGTCAAGAAATGATGTTCATATTCGTGCGCCATCAACAGATAGCTTAAATATTCGTACTGATGAGAAAATGCCAGCACGTGGTGAAATTAGCGAACAGGAGAGTAATGGCGAAATCGAACAGCCTTGGCATCATCCATACTTCCAACTACAAGCATACCCAAGTTCATATGACATGAATACAGCGCAAGAATGTTGGAACCTTTCAAAAGCCGATAGCCAAAATGCATGCGATTCCAATAACATACAAAATGTGATAATCAATTTTCCACCATTGAATGGCGAAGAAGACATTAAAGCACCCGATTTATTGAAAACAATTATGCAAACAGTAGCAAAACAAGAACCATCAGGTATTAATGACGAAGCAAGTGGTAGTAATAGCAATTtaattgtaaagaaaaatcGCTCATTCCGTTGTCCTGAATGCTCGAAAGTCTTTATGAAATTGAGAGCGAGAAATCGTCACATGGAGCAAGAACATCCAAACTTTAGACGAGTGAAAAAGATTAAACCAGCACCGACTGCAACACAAACAAGCAAATCAGAACCGACTGTTTTTCCAACATCCTCGTCTTCGGCACTTGTCAATTGGAATGCAACATCGACAACACAGGAACAAGAAGTAAAAGTATTGAGTATCATTAAACATGAACCATCAACGTCAGCTGCTGTTCTTgtgaaaaatgagatgaatagAATGCTTATTAGTACAACAGGCTCAATAAAGATGGAAATGGATCGTTTATTATTGGAGCCTTCGACATCCTCAACTACGCAACAAATGTCAACATtaggattaaaaattaagagaacTTATATGTGCGCAAAGTGCAATGAACAATTCCGTACACTCAAGCTACTTGATAAGCACTTTCAAATTCATCCTGCTGAATGTACATTGTGTCAAAAGACTTTCAATAGCTGGAATacattttcattacatttgAAGCATCATCTTAACATTCGTGTCCATGCATGTCGATTTTGTCCAAAACGTTTTGTTCAACGTCAAAGGCTTGTAGAGCATGAGAGAATCCACACCGGCAGTCTACCCATCAAATGTCCTGATTGTGATGAACGATTTAGAAGATACTCCAATATGCTTCATCATAGGGCACGAGTACATTTGAATAAGAAGGCTAAACAGGAGGATTATGTGTGCGATTGTGGTGAAATTTTCCAAACAAAAGCTAAATTAGAGTGGCATCAAGAGACTCATGAGAATAAGCCAAAACCTTGTCCCTACTGTCGTGAACGTTTCACGCATCGTAATAGTCTAACCCGTCACATTCGATTATCGCACACGGAAAAGTATGTCTTTGTCAAAAGCAAAGCAGTTAATTGTCCGATTTGTAGCTGCACATACTTGCCGTCTAGTATAAAGGCTCACATGGCTACACATCAACTatcaaataaagaattttcatgttcGATTTGCAGTAAACAATTTAGCACAAAATGGAATCTAAAGCAGCATCATTGGACTCATGCAAACCGTAGCTCAAAACCATTCCAATGCAATGTATGTCCCAGTGCGTTTGTGCGTGAGACCGACTACACAACACATATGAATGCTCACCGATCAATTAAACCATTTACTTGCAATACTTGCGGTAAAAGATTCGTTCGTAAATACAATTGGTTGCGTCACTCACGTGAACACGAGCGAGAGAAGAAATTTACATGCGATATATGCAATAAGAAATTTCATCGGGCTTATTATCTCACCGAACATAAACGTGTCCATACAGGCGAGCGTCCCTTCTCCTGTACAATTTGTGGAAAGACATCAGCAACAAAAACGAATCATAATAAGCACATCAAGATTCATCATGCTCGAGATCCATTGACGGCTGAAGGCTAA
- Protein Sequence
- MEQQQCPICMLYLLPGMCLQDHLDTHPKDMIIKALLSVKTEPPKQQTPVSNSNEMAATTVYLTTPFNSSQTHIYQQQNQQQQQQQQNQTPIQNSNFALAKRNTGNNAVLLGNRPYRLTLDTQQAAANISPPTTTTFLNATAVTPNHSYGRRVTNENDLFASDNNKTAFRCIQQNTEQKNIMIVNTSSTQFSIQQTVPVKKQQQQQQHGQTSTAIELHPVIMDNSTLSNSVPNAISIIPRYTSEKYSGPPPSYESSVTNTINDKPRVIDLTQTPTNTAMKMMEKQCIVGNGNNNNNNNKLTTLSSNGADENRHLMLTSAPQKILEYTQTENGDYMITEKLLSTTHHHNQHHQNQHQQSTNSHNMSHEEEIIEEIHDSDDNSYNVKYVEINEPLTFNLSSSDNNSGKYHQEEHYTVIEESEVEQINSFNESQGSSSNIESHAPRKSGVKVISNVKLTSAEMLSPTIKDIIKQYNNNNASSTSKNNNNNNNSNNNKTQTEKEMQIEQPVVDIVHTEITDTEDDDDYDVEMKEDMNKNDTKALIQCTETLNLSSNDKEEASSSSSSACTTSVIRKTATTISLDAIPSTSKAQDESKEQKLKNEPEPSTSSESLRKSSSTNVVFNSTNRLKQKEIYKQPKKLVVKLKKPLQEGGECTSSISSVTIQTVAANADNKDTTQIKNENMERETITTTQLHDHDDENVDIQKHSAMTERDSTVFKVESNEQFTVTFLDQHDYEPIKKITVTPEIHHDSETNQSVMSMELEPETTSVAVKREQTDNELPIIVKTEMSSCSASSMASNSQSSSCSRSPARINIENVSSININESSPINFLYQNDRVRFSPPLSPYVYMKTFSTSEDQPKQETDASWNNSSSVVTQNSDQNSTCSRYTPSFDDNRSNYTDIDVNLKTSRNDVHIRAPSTDSLNIRTDEKMPARGEISEQESNGEIEQPWHHPYFQLQAYPSSYDMNTAQECWNLSKADSQNACDSNNIQNVIINFPPLNGEEDIKAPDLLKTIMQTVAKQEPSGINDEASGSNSNLIVKKNRSFRCPECSKVFMKLRARNRHMEQEHPNFRRVKKIKPAPTATQTSKSEPTVFPTSSSSALVNWNATSTTQEQEVKVLSIIKHEPSTSAAVLVKNEMNRMLISTTGSIKMEMDRLLLEPSTSSTTQQMSTLGLKIKRTYMCAKCNEQFRTLKLLDKHFQIHPAECTLCQKTFNSWNTFSLHLKHHLNIRVHACRFCPKRFVQRQRLVEHERIHTGSLPIKCPDCDERFRRYSNMLHHRARVHLNKKAKQEDYVCDCGEIFQTKAKLEWHQETHENKPKPCPYCRERFTHRNSLTRHIRLSHTEKYVFVKSKAVNCPICSCTYLPSSIKAHMATHQLSNKEFSCSICSKQFSTKWNLKQHHWTHANRSSKPFQCNVCPSAFVRETDYTTHMNAHRSIKPFTCNTCGKRFVRKYNWLRHSREHEREKKFTCDICNKKFHRAYYLTEHKRVHTGERPFSCTICGKTSATKTNHNKHIKIHHARDPLTAEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00320915;
- 90% Identity
- iTF_00320915;
- 80% Identity
- -