Basic Information

Insect: Chironomus riparius
Gene Symbol: -
Assembly: GCA_001014505.1
Location: JXPV01011637.1:21184-23370[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.027 1.6 9.4 2.2 2 23 21 43 20 43 0.95

2 18 0.013 0.77 10.4 0.4 7 23 56 72 50 72 0.86

3 18 0.052 3.1 8.5 0.5 2 23 78 99 77 99 0.96

4 18 1.5e-06 9.2e-05 22.8 0.5 1 23 103 125 103 125 0.98

5 18 0.004 0.24 12.0 5.3 1 23 131 154 131 154 0.97

6 18 0.00022 0.014 15.9 1.6 1 23 162 184 162 184 0.95

7 18 0.0013 0.079 13.5 3.9 2 23 191 212 190 212 0.97

8 18 0.00092 0.055 14.0 0.4 1 21 217 237 217 238 0.97

9 18 0.0022 0.13 12.8 0.7 1 23 342 365 342 365 0.96

10 18 0.0045 0.27 11.9 1.1 1 23 370 393 370 393 0.91

11 18 0.053 3.2 8.5 0.4 1 23 404 426 404 426 0.94

12 18 8.1e-05 0.0049 17.3 0.4 2 23 433 454 432 454 0.95

13 18 0.00021 0.012 16.1 0.3 1 23 460 483 460 483 0.91

14 18 0.38 23 5.8 1.9 2 23 491 512 490 512 0.93

15 18 0.00013 0.0077 16.7 2.8 1 23 521 544 521 544 0.92

16 18 0.00011 0.0067 16.9 0.9 1 23 553 575 553 575 0.91

17 18 0.019 1.1 9.9 1.6 6 23 585 602 582 602 0.93

18 18 0.00072 0.043 14.4 1.9 1 23 608 630 608 631 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.027	1.6	9.4	2.2	2	23	21	43	20	43	0.95
2	18	0.013	0.77	10.4	0.4	7	23	56	72	50	72	0.86
3	18	0.052	3.1	8.5	0.5	2	23	78	99	77	99	0.96
4	18	1.5e-06	9.2e-05	22.8	0.5	1	23	103	125	103	125	0.98
5	18	0.004	0.24	12.0	5.3	1	23	131	154	131	154	0.97
6	18	0.00022	0.014	15.9	1.6	1	23	162	184	162	184	0.95
7	18	0.0013	0.079	13.5	3.9	2	23	191	212	190	212	0.97
8	18	0.00092	0.055	14.0	0.4	1	21	217	237	217	238	0.97
9	18	0.0022	0.13	12.8	0.7	1	23	342	365	342	365	0.96
10	18	0.0045	0.27	11.9	1.1	1	23	370	393	370	393	0.91
11	18	0.053	3.2	8.5	0.4	1	23	404	426	404	426	0.94
12	18	8.1e-05	0.0049	17.3	0.4	2	23	433	454	432	454	0.95
13	18	0.00021	0.012	16.1	0.3	1	23	460	483	460	483	0.91
14	18	0.38	23	5.8	1.9	2	23	491	512	490	512	0.93
15	18	0.00013	0.0077	16.7	2.8	1	23	521	544	521	544	0.92
16	18	0.00011	0.0067	16.9	0.9	1	23	553	575	553	575	0.91
17	18	0.019	1.1	9.9	1.6	6	23	585	602	582	602	0.93
18	18	0.00072	0.043	14.4	1.9	1	23	608	630	608	631	0.96

Sequence Information

Coding Sequence: atgacatcaaaaagTACTCTCAAAATGAACAGGAAAGAGGGAAAGTCAAAGATAAGCcttaaatgtgaaatttgcaaaactattttaaaatcggaatattattttaagaaacaCAAAGAAAGAAGACATCCTGAGATTCCACGGAACTACATCTGCGACTATGATGGTAAACATTTTGCAAACAAGAATTATTTAAGGATTCATATGGAACGGCATCAACAAGAGATCTTGACATGTAACATATGCATGAAAGCGTACAAttcaaagattattttaaagagGCACTTGCTTAGTCATCTAGAAAAGTATCCGTGCGACGAATGCGGAGCTACATTTAGTCATAAAACACTCCTCAACAATCACATATCAATCCACAAGATGGAATTCACATACAAGTGTAAATACTGTACCAGAATGTTCAAAAACACAACATCCAGaaacaatcatcatcaaattgcACATAAAAATAAGGAGGAACTGCATTTTAAATGCAACAAATGCAACATCTTTTTCGAGACAAAAGAAGACTTAAGGATCCATAGCTTTATACATTTCAATGGGGAAATCAAGACTTGCTTTCATTGTGATCAGATCTTTAAAACTACGAGATTATTAACTATTCATTTACAGAAGCACTcaaataagaaatttcaatgCGAGTCGTGCCtggaaaatttcacatttaaaagtGGTTTAATGAAGCATATTCGATTAAATAGATGTAAAGGTCCACCAACAACTTTAGATGATGATCAGATGACTGAAgaggaaattaataaaattgctaAGGAACAACTCGAATCAATTTCCTATAATCGCCTTAAAACCGTACCTGAAGTTGAAAAAAGTACTGAAAAGATTGAAGATTTAACGGAACCAGAAGTTATTGAGAATCAAAGTGATGTAAATGAACCAGAAATTGAAAGTTCAGTAGAAAGTGAACATGAAGAACAGACAATAAAAACGATTCTAGAACAAGATTCACcacaaaagttaaaaagacCTGGAAGAGCTCATAATACTTATATCTGTGACAAATGTGGtgattcaataaaatacaGAAAGAATCTTGAGCTGCATATGAAGAATAATCATTTAAGGAAAAGCTATAAATGCTCAAACTGCTcggaagtttttaaaagtaaaattagaTATAAAGCACATTCATTACAGGCTCACGGAGTTAAGCAAAGGATTGctgttgaaatatttgaatgtgCAGTTTGTAACAAGAAATTCGATATTAAAAGCATATATGAAGCACACAAATTATCGCATGAAAATACTCGTCCACAAGTCTGTAAAATATGTAATGCGTCATTCAAAAGTATTGGAAACCTTAAAAGACACAATCTCATCCATATTGATGATCGAAactttttatgtgatttatgtccaaaaagttttaaaagtgaaaatgctcttaaaatacacaaaaatgcaGTTCATGCATCAGTTAAAGTTTATGTCAGCTGTCCACACTGTAAGATtattttacaagaaaaaaaccTGAAAATTCACATTCATAATCAGCACACAGAAGAAGGTCAACAGAAGCCATTCACATGCAGTGTATGCAGCAAGACATTTAAGAatgaatttctattaaaaaggCACTTCGAGTACCTTCATTTCAGTTCCAATCGAGGAATAGTCTATAATTGTGAGCAGTGTGGACTGACTTTTAATAGACAAAGAGATTTAAGGATTCATTCATTTGAGCACTTTGAAGGAACAATTCATTCTTGTTTCTGTggtaaaaagtttaagaacaAAAGATTACTCTTGATTCACTCGACTGTCCATACTTCTGATACCAAGTTTACATGCAATTTGTGTGATGCAAATTTCAAGACATCTGGTGGACGAAGGAAGCACATAGCAAAGCATCATAAAACAGAATTAAATGTAGAGCATTTAGAGATTAAGTACGATGAGAATGTTTCAGCATTTTAa
Protein Sequence: MTSKSTLKMNRKEGKSKISLKCEICKTILKSEYYFKKHKERRHPEIPRNYICDYDGKHFANKNYLRIHMERHQQEILTCNICMKAYNSKIILKRHLLSHLEKYPCDECGATFSHKTLLNNHISIHKMEFTYKCKYCTRMFKNTTSRNNHHQIAHKNKEELHFKCNKCNIFFETKEDLRIHSFIHFNGEIKTCFHCDQIFKTTRLLTIHLQKHSNKKFQCESCLENFTFKSGLMKHIRLNRCKGPPTTLDDDQMTEEEINKIAKEQLESISYNRLKTVPEVEKSTEKIEDLTEPEVIENQSDVNEPEIESSVESEHEEQTIKTILEQDSPQKLKRPGRAHNTYICDKCGDSIKYRKNLELHMKNNHLRKSYKCSNCSEVFKSKIRYKAHSLQAHGVKQRIAVEIFECAVCNKKFDIKSIYEAHKLSHENTRPQVCKICNASFKSIGNLKRHNLIHIDDRNFLCDLCPKSFKSENALKIHKNAVHASVKVYVSCPHCKIILQEKNLKIHIHNQHTEEGQQKPFTCSVCSKTFKNEFLLKRHFEYLHFSSNRGIVYNCEQCGLTFNRQRDLRIHSFEHFEGTIHSCFCGKKFKNKRLLLIHSTVHTSDTKFTCNLCDANFKTSGGRRKHIAKHHKTELNVEHLEIKYDENVSAF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00320899;
90% Identity: -
80% Identity: -