Crip016644.1
Basic Information
- Insect
- Chironomus riparius
- Gene Symbol
- -
- Assembly
- GCA_001014505.1
- Location
- JXPV01011601.1:9983-13297[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 1.6 99 3.8 0.0 2 23 7 28 6 28 0.92 2 27 1e-05 0.00062 20.2 2.1 1 23 34 56 34 56 0.96 3 27 2e-05 0.0012 19.2 0.0 1 23 62 84 62 84 0.98 4 27 0.00012 0.0072 16.8 1.0 1 23 91 113 91 113 0.99 5 27 5.6 3.4e+02 2.1 0.2 2 23 123 142 122 142 0.68 6 27 0.00023 0.014 15.9 4.1 1 23 148 171 148 171 0.95 7 27 2.4e-05 0.0014 19.0 0.5 1 23 177 199 177 199 0.97 8 27 0.057 3.4 8.4 4.0 1 23 231 254 231 254 0.96 9 27 1.8e-05 0.0011 19.4 1.5 3 23 262 282 261 282 0.98 10 27 1.3e-05 0.00078 19.8 0.6 1 23 324 346 324 346 0.98 11 27 1.9e-05 0.0011 19.3 2.3 1 23 377 400 377 400 0.96 12 27 0.00037 0.022 15.3 0.2 1 23 406 428 406 428 0.97 13 27 0.0015 0.093 13.3 0.5 2 23 546 568 545 568 0.95 14 27 4.4e-06 0.00027 21.3 3.1 1 23 576 599 576 599 0.95 15 27 0.0042 0.25 11.9 0.2 3 23 604 625 602 625 0.93 16 27 0.0063 0.38 11.4 0.2 2 23 634 656 633 656 0.93 17 27 2.5e-05 0.0015 18.9 1.5 1 23 661 684 661 684 0.95 18 27 2.3 1.4e+02 3.3 11.2 1 23 690 712 690 713 0.94 19 27 0.0011 0.064 13.8 4.1 1 23 724 747 724 747 0.96 20 27 0.11 6.8 7.4 0.1 2 23 757 779 757 779 0.94 21 27 0.017 1 10.0 0.2 2 23 788 809 788 809 0.97 22 27 4.5 2.7e+02 2.4 1.1 3 23 815 835 813 835 0.81 23 27 0.017 1 10.0 0.2 2 23 840 861 840 861 0.97 24 27 4.5 2.7e+02 2.4 1.1 3 23 867 887 865 887 0.81 25 27 0.019 1.1 9.9 4.1 1 23 897 919 897 919 0.98 26 27 5.7e-05 0.0034 17.8 3.1 1 23 926 948 926 948 0.97 27 27 1.1e-08 6.9e-07 29.4 0.7 1 23 953 975 953 975 0.98
Sequence Information
- Coding Sequence
- atggaaaataagcAGATTGTTTGTGAAGTTTGCGGTGAATTAGTAGATGAGGATAAGTATAGAAGGCATCTAAATAATGGACATAAAGATAAGCGAGAATTTCGATGTGATTTATGCGGAAAAGAATTTACAAGTAATTACAATCTCCAATATCATGTTGCACATCATTTGAACGAGAGAAATTTCGTTTGTACGGAATGTCCGAGAGCATATAATACAGCAGCTGATTTAGCTCAGCACTATCGGATCCATGAAAAGCAAAGAGATCCATATAAATGCGAATACTGTGGTTTAGCATTCCAAATAAGAAGCAGATATAACACACACATGAGAGTCCATAAAACTGAGCGTGGAAAAGGCCCAAAAGAATGTCCCATTTGCAGTAAAATTGTTCAGGATCTGCGAAGGCACAATGAAACTGTCCATTTGAATATCCGAAATCATGAATGCGACCTTTGTCACAAGAGATTCAATAAGAAATCAGGTTTGGAGCGACATTTTCTGATGGTACATGAACAGCAAAAGAACTATATTTGTGATTTATGTGGAAAAGCATTTGGTGAGAAATCACTGCTTACAAAACACAAAAGTAGACACAATTCCATCCGAACATCATTCTATTGCACTGTTTGTAAAAAGTATGTTGGGGagatcaaaaatcattatgaAACCATTCATGCTGAATTACCATTTCAATGTGAACATTGCTATCGACGGTTTGCCAAATTAAGAGAATATGATAATCATTTAACGTCAAAACATACAAAGTTAAGAAAATGGCTGTGTGATTTATGTGGTAAGAGATTTGTCGAGAAATATCAACTAAAACGACATTTTCGGTCGCACATTAATGTTAATGGAATAACAGAAGCTGACATTTCTAAACTCAAGCCAATTTATATTGGTGAGGATAGAAAGGAACGAAAATCACCTTCTAAAACCTCTTCAAATAAGACCAAATATAAGAAGTATGAATGCAGTTTATGTGGAAAGAAGTTTGCAGGAAAAACCCTGCTTAAAACACATCTTATAAGGCACcagaataagaaggaaaattattgtaatatATGCAagatttatgatgataatattaAGGAACATTACGAAACTGAGCATAATGATCTCGAGTTCACTTGTgagatatgttttaaaaagtttgcaagAAGCTCACAGCTTAGAAATCACAACTCTACAAATCATACAAATATTGGTGAACATTCTTGTGATATTTGTGGAagaatctttaataatttagcAGCCATAAAATCACACATTACGGTCCATGCCAAATCTGAGACAATGGTGCAGTCGGATGATGATTACAATGtttttgaacaaataaatGATTTCGATGATGAGGAAAGTGATTATTTTGAGCATGAAACAAAGCCTaatgatattgaaaatgtaaatgtaGAGTCGATTGTTATTAAAAAGGAACCAGAAGACGAATATGATAATATTTGCTATGAATTTTCTCCAACAGCAATTTCAATAAAGAGCGAGCATTTAACAGATCAAGAGGATATTGATGCTTTCGATAATGACTTCACGGATGGTATAAAGGAAGAAACAGCAATAGAACCAgaacttgaaataaaaaaggttgtcaaaaaggaaattgatcAAGAAATTAAGTGTAATGTTTGTGATGCAATATTTCCTTCAAAAGACAAGTTCAAGACACACTTTATGTCTGAGCATGTTGAGAGTAATAAATCGTCATTTTCGTGCAAGGAATGTGATAAATCATTTAAGGATAAAAAGTCTCTTAATAAtcactttaaaaatgttcacaTTAAAATAGACTGTGAATATTGTAGTGAAAAATTCACTTCTAAATATGAAGTTGATAAGCATGTTAAGGCAGAGCATGAATCTAGTGACAAAGCTTCATTAATGTGTAGTTTTTGTGGTAAAATTCTAATGACTGAAAGGAACTTAAAGCTTCATATTCAGGCAATTCATAGCGGTGACAGATTTCCATGTAcaatttgtgataaaaaattcagctaTAAATCAGCGATGTATAGGCACAGAGACAGGGAGCATAAAACTGGTCGGAAGCATAAATGCAGCAAATGTCCTCAACAATGCGCTACTAAACATGAACTACGACTACATAAGGAACATCATCATAATGTTAACCGAAAAAATACCTCACCAGAACATATGTGCTTTTATTGTGGAGTTTGCTTTCCATCCAGTTACGTTTTATCTCGTCATAGACGAAGAGTTCACGGTGATGAAGATCCTGAAATTATTCGAGAATGTGGAATATGTAAGGAAGTCCTTAAGGATCTATATTGGAAACGAAAACATATGGCACAAGTtcatttaaatggaaaaaagttaaagagaACTTGTGGATATTGCAAGACGGAATTCGAGCTGTATGAAGAGTTTAAGGCACACATTGAATCCCATGTTGGTCTTTTCATTTGTATTACTTGTggagaatttcattttgatgctGAATCGCTTAAATCTCATCAATATACTCATNAGTTAAAGAGAACTTGTGGATATTGCAAGACGGAATTCGAGCTGTATGAAGAGTTTAAGGCACACATTGAATCCCATGTTGGTCTTTTCATTTGTATTACTTGTggagaatttcattttgatgctGAATCGCTTAAATCTCATCAATATACTCATAAAAAGATCGATTGTAATTTACGCAAGTACATTTGTGATCATTGTGGACACCGTCTATTTACCAAACTTCAACTATCAATGCACATGCTGAAACATGTCAAAAGCTTTGAAGTTCATTATTGTGATATTTGTGGGAAGGGCTTTAAATTTGCATCGTCACTTTATACACATCGTAAATATCACGGAGAAGGAGAATTCGTCTGTACATATTGCGGAAAGAAGTTTGCCAGGAATTCCGATCTTGTCAATCACATTCGAACTCATACAAATGAA
- Protein Sequence
- MENKQIVCEVCGELVDEDKYRRHLNNGHKDKREFRCDLCGKEFTSNYNLQYHVAHHLNERNFVCTECPRAYNTAADLAQHYRIHEKQRDPYKCEYCGLAFQIRSRYNTHMRVHKTERGKGPKECPICSKIVQDLRRHNETVHLNIRNHECDLCHKRFNKKSGLERHFLMVHEQQKNYICDLCGKAFGEKSLLTKHKSRHNSIRTSFYCTVCKKYVGEIKNHYETIHAELPFQCEHCYRRFAKLREYDNHLTSKHTKLRKWLCDLCGKRFVEKYQLKRHFRSHINVNGITEADISKLKPIYIGEDRKERKSPSKTSSNKTKYKKYECSLCGKKFAGKTLLKTHLIRHQNKKENYCNICKIYDDNIKEHYETEHNDLEFTCEICFKKFARSSQLRNHNSTNHTNIGEHSCDICGRIFNNLAAIKSHITVHAKSETMVQSDDDYNVFEQINDFDDEESDYFEHETKPNDIENVNVESIVIKKEPEDEYDNICYEFSPTAISIKSEHLTDQEDIDAFDNDFTDGIKEETAIEPELEIKKVVKKEIDQEIKCNVCDAIFPSKDKFKTHFMSEHVESNKSSFSCKECDKSFKDKKSLNNHFKNVHIKIDCEYCSEKFTSKYEVDKHVKAEHESSDKASLMCSFCGKILMTERNLKLHIQAIHSGDRFPCTICDKKFSYKSAMYRHRDREHKTGRKHKCSKCPQQCATKHELRLHKEHHHNVNRKNTSPEHMCFYCGVCFPSSYVLSRHRRRVHGDEDPEIIRECGICKEVLKDLYWKRKHMAQVHLNGKKLKRTCGYCKTEFELYEEFKAHIESHVGLFICITCGEFHFDAESLKSHQYTHXLKRTCGYCKTEFELYEEFKAHIESHVGLFICITCGEFHFDAESLKSHQYTHKKIDCNLRKYICDHCGHRLFTKLQLSMHMLKHVKSFEVHYCDICGKGFKFASSLYTHRKYHGEGEFVCTYCGKKFARNSDLVNHIRTHTNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00320886;
- 90% Identity
- -
- 80% Identity
- -