Csup004930.1
Basic Information
- Insect
- Chilo suppressalis
- Gene Symbol
- -
- Assembly
- None
- Location
- chr29:11175168-11179086[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 5.3e-06 0.079 12.8 0.1 23 44 130 151 122 156 0.88 2 8 0.052 7.7e+02 0.1 0.0 18 52 179 213 176 215 0.80 3 8 0.17 2.5e+03 -1.6 0.1 23 44 212 233 205 243 0.77 4 8 0.15 2.3e+03 -1.4 0.1 18 44 237 263 226 268 0.70 5 8 2e-05 0.3 11.0 0.0 18 53 265 300 260 301 0.90 6 8 1.5e-06 0.022 14.6 0.3 10 48 312 350 306 354 0.85 7 8 0.091 1.3e+03 -0.7 0.1 26 50 357 385 347 388 0.68 8 8 0.062 9.1e+02 -0.2 0.2 21 48 380 407 377 409 0.83
Sequence Information
- Coding Sequence
- ATGTCTTCAGAATGTCCCTTTATTAAGCAAGAGCCGGATGATGACGTTCTATCATACAGAAATGGGCCGAGCGAAACCAGAGAAATCGTCCCAGAATTTGTAAATATTAAACAAGAAGTCGAGACTGAATGCAGCGGTGTAAGGATTAAAGTGGAGCCCATTGATGATGAGTCATCGCCACCTCATGATGCTGCCACTAACTTAAGAGGAAATCATTTTATAGAAGTGAACATTCCCAGTGTAAGTGTGAGAGAGAAATCTAAAGAGGAATATGTCACAGTCAAAGCAGAACCATTGGAGTACAATGAAGATGATAGAATGGAATCTGAAGATGGCACTAATACTAATGTGGAGTGTCCAGACAATACGGATACCATCTCGTCGACCACAGACAATACGTGTCCAATATGTCAAAAAGTGTACTCGAGCAAAAGCAATTTGCAACGTCACATCGCCAATCACAAAAGAAAAATTTACTCCTGTGAGTTTTGCTCTAAGCCTTTCTACGAGCAGAGACTATTGGATGCGCACAAAAGAACGCACGCTGAAGTAGGATACAAATGTGATGAATGTTCCAAAGAATTCAAAACATCGGCCAATCTCAACCAACATAGACGTATCCATATGACAGTGAAACCATTCTCTTGTGATCTTTGCGGCAAAACGTTTGCAGTAAAAGCCAACCTTCAAAAACACCGCGGCAAGAAGCGATGTAAAATTCCCGGTCCATTAATATGCGCCGTGTGCAATAAAGAATTCAAAAGCGAATACTTATTAAAAAGTCATCTAGTTAGACATACTACTGAGAAACCTTTCACTTGCGACGTGTGCAAAATGAAATTCAAACATAAAGCGACTTTGATACGTCACATGCAGTTGCACAACGGTTTTAAGCCGTACGTCTGTCAATATTGCAATAAAACTTTCACGCACCCTGGACTTATGAAGCCTCATATGAGAATGCATACTGGTGAAAAGCCTTACCAATGTCCAATATGCGGGAAAAACTTCTCTCACAAACATAACATGCAGAGGCACACGATAAGGCATGAGAAAGTGAAAAAGTTGACTTGTGAACTTTGCGACAAACGGTTTCCGAGAGAAAGCAGGCTTAAATACCACATGAAAACCCATATTAGCGAAAAGCATTTTGCTTGTTTTGTGTGTCCCAAAAAGTTTTCCCACAGACAGAATATATTGAGGCATTACAAAAGGAAACATCCGAACGCTGAATACGATTGTAAAGAAACAGATGCCAGTGTCGCATCGAAACTTTGGAACGAAGTTGTCAATATGAAAACCAAAATGCTAGACAGAATTCCAGATAAAAGTGCAAAAGTTGCTATGCAACAAAATGACATGGTTGGACACGAAAATGAAACCGAGTACATTGTTCCGGATAATGTTCCTAAGACGGTGAAAGAAACTATAGTTATAAAAATAGAAAAAGCCGATTCTTCCGAAGAAGATGAAGTAGATATTAAGAATGAATGA
- Protein Sequence
- MSSECPFIKQEPDDDVLSYRNGPSETREIVPEFVNIKQEVETECSGVRIKVEPIDDESSPPHDAATNLRGNHFIEVNIPSVSVREKSKEEYVTVKAEPLEYNEDDRMESEDGTNTNVECPDNTDTISSTTDNTCPICQKVYSSKSNLQRHIANHKRKIYSCEFCSKPFYEQRLLDAHKRTHAEVGYKCDECSKEFKTSANLNQHRRIHMTVKPFSCDLCGKTFAVKANLQKHRGKKRCKIPGPLICAVCNKEFKSEYLLKSHLVRHTTEKPFTCDVCKMKFKHKATLIRHMQLHNGFKPYVCQYCNKTFTHPGLMKPHMRMHTGEKPYQCPICGKNFSHKHNMQRHTIRHEKVKKLTCELCDKRFPRESRLKYHMKTHISEKHFACFVCPKKFSHRQNILRHYKRKHPNAEYDCKETDASVASKLWNEVVNMKTKMLDRIPDKSAKVAMQQNDMVGHENETEYIVPDNVPKTVKETIVIKIEKADSSEEDEVDIKNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00319133;
- 90% Identity
- iTF_00319133;
- 80% Identity
- iTF_00319133;