Csup004596.1
Basic Information
- Insect
- Chilo suppressalis
- Gene Symbol
- Mbd3
- Assembly
- None
- Location
- chr14:10578893-10588902[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.9e-29 2.9e-25 87.4 0.0 1 72 5 71 5 75 0.95 2 2 0.00065 1.9 7.9 0.0 29 73 93 145 79 148 0.87
Sequence Information
- Coding Sequence
- ATGAATATCTCAATAGAAAGAAAAAAGATGGATTGTTCAGCTTTGCCAAAAGGATGGCAAAGAGAAGAAGTTGTAAGAAAAACAGGACTTTCTGCTGGGAAAGTTGATGTGTTTTATTATAGCCCAACAGGTAAAAAGTTCAGCAGTAAACCGGAGCTAGTTCGTTATCTTGGTGATAGTATGGACCTGTCGTGTTTCGACTTTCAACAGGGTCAAATAAACACTGTGTTGCTGTGCAAGGCCAAGAAAGCTCGAGCGCAGTTTGATTACAGGGGTCTGCGGTCTGATGCTTCTTTGGTGCCACCAATAAGACAAACTGCTTCAATTTTCAAGCAGCCCGTAACTGTTTACAAGACCCAAGACAGTAAGGTGAAGACGGATTTAAAGCATGGCACTCAAGAAAAGCCAAAGCAACTGTTTTGGGAAAAAAGATTAGAAGGTTTGTCAGCTTGTGATGCAAATGGTATGATAGGAACAACCACATTGCCAAAATACATCAAGCCGTTAGGCCCCTATACATCTGATGCCACCACCATACAATCACTGGCTACTGCACTTCATGTATCATCACAGCCCATAACAGGTCAAACTGGGGGCAAGCAAGCTATACTCGAAAACCCTGGTGTTTTTTTAAACCCTGAGCAGCCCTTGATCGCTGCGGTGACTATAACTAAGGACGACGTTCGACGTCAGGAAGACCGCGTCAAGCGAGCGCGTTTACGTTTGCAGGAAGCCCTGGCGGCCGCGTAG
- Protein Sequence
- MNISIERKKMDCSALPKGWQREEVVRKTGLSAGKVDVFYYSPTGKKFSSKPELVRYLGDSMDLSCFDFQQGQINTVLLCKAKKARAQFDYRGLRSDASLVPPIRQTASIFKQPVTVYKTQDSKVKTDLKHGTQEKPKQLFWEKRLEGLSACDANGMIGTTTLPKYIKPLGPYTSDATTIQSLATALHVSSQPITGQTGGKQAILENPGVFLNPEQPLIAAVTITKDDVRRQEDRVKRARLRLQEALAAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01090793;
- 90% Identity
- iTF_00035682; iTF_01282310; iTF_01281361; iTF_00382639; iTF_00284563; iTF_00448148; iTF_01333844; iTF_00448149; iTF_00034748;
- 80% Identity
- -