Csup012584.1
Basic Information
- Insect
- Chilo suppressalis
- Gene Symbol
- LRRFIP2
- Assembly
- None
- Location
- chr25:16297455-16299302[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5e-15 3.7e-11 42.6 7.2 203 297 1 87 1 89 0.81 2 2 0.052 3.9e+02 -0.2 5.6 1 33 86 118 86 119 0.94
Sequence Information
- Coding Sequence
- GCGCTGGTGTCGCACCAGTCCGAGCAGATGTTGAACGAAGCTGGTGAAGGAACGTTAGACGTCCGGTTGCAGAAGCTCTTATCATCGAAGCTGGCGCTAGAGTCGGAGGTCCGCAAACTGAAGCTGCAACTGAACGAGGAACGAGCTGCGACCCACAACGGAGTGCACTCGCTGCACGACCAGGAATACGAGAACGAGCTTGAAACGTTACGACGTTGCGTGTCGGAAGCGAAAGCGCGCGCGGCGCGAGCGGAAGCCGAGGCGGCGCTCCAGGGGGCCGCTGTCGCTAGGCTCGAGGCGCAAGTGGCCAGGCTGCGGGCCCGCCAGGACCATCAGGACGAGCACGAGGAGCAGCTCA
- Protein Sequence
- ALVSHQSEQMLNEAGEGTLDVRLQKLLSSKLALESEVRKLKLQLNEERAATHNGVHSLHDQEYENELETLRRCVSEAKARAARAEAEAALQGAAVARLEAQVARLRARQDHQDEHEEQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -