Basic Information

Insect: Chelonus insularis
Gene Symbol: PRDM10_1
Assembly: GCA_013357705.1
Location: NW:598470-603921[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 9.2e-08 6.3e-06 25.6 0.7 1 23 542 564 542 564 0.98

2 13 0.0067 0.45 10.3 4.1 1 23 572 595 572 595 0.97

3 13 1.3 91 3.0 0.1 5 23 616 634 612 634 0.89

4 13 0.00028 0.019 14.7 0.8 2 23 649 670 648 670 0.95

5 13 0.00029 0.02 14.6 1.9 1 23 690 712 690 712 0.98

6 13 0.0073 0.49 10.2 3.5 2 23 721 742 720 742 0.96

7 13 0.0054 0.37 10.6 0.9 1 23 749 771 749 771 0.98

8 13 0.00011 0.0077 15.9 3.2 1 23 778 800 778 801 0.95

9 13 0.00098 0.067 12.9 3.9 1 23 806 828 806 828 0.98

10 13 0.00014 0.0097 15.5 4.4 1 23 834 857 834 857 0.96

11 13 0.0012 0.079 12.7 1.7 1 23 891 914 891 914 0.97

12 13 9e-05 0.0061 16.2 2.0 1 23 936 959 936 959 0.95

13 13 0.0014 0.092 12.5 3.4 3 23 998 1019 996 1019 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	9.2e-08	6.3e-06	25.6	0.7	1	23	542	564	542	564	0.98
2	13	0.0067	0.45	10.3	4.1	1	23	572	595	572	595	0.97
3	13	1.3	91	3.0	0.1	5	23	616	634	612	634	0.89
4	13	0.00028	0.019	14.7	0.8	2	23	649	670	648	670	0.95
5	13	0.00029	0.02	14.6	1.9	1	23	690	712	690	712	0.98
6	13	0.0073	0.49	10.2	3.5	2	23	721	742	720	742	0.96
7	13	0.0054	0.37	10.6	0.9	1	23	749	771	749	771	0.98
8	13	0.00011	0.0077	15.9	3.2	1	23	778	800	778	801	0.95
9	13	0.00098	0.067	12.9	3.9	1	23	806	828	806	828	0.98
10	13	0.00014	0.0097	15.5	4.4	1	23	834	857	834	857	0.96
11	13	0.0012	0.079	12.7	1.7	1	23	891	914	891	914	0.97
12	13	9e-05	0.0061	16.2	2.0	1	23	936	959	936	959	0.95
13	13	0.0014	0.092	12.5	3.4	3	23	998	1019	996	1019	0.96

Sequence Information

Coding Sequence: atgaatttaggGGCCCCTCAAAGAGTGGGGGCCCCTGAAGACCCAATCgatattatttcaacaattaataaatcatctgAAACAATGGAAAATTGGAGTGAGGAAcgtattgttaaaaataacaatcgtttattatttttgacagTTGAATATGTGGATGATAATCAATGTAAAGATTTCTCCAAAGTTTTTTCGCCATATGAACAAGTGTCTTTTTCACCCAGGGCTTCCTCTCCACTCTCTGATTTTGAACACAGAGTCAGTCCTTTGGATCCCAATATGAGTTCAACGGCAAGATATTCTCCTACACCTGTTCAACTGTCAAGTTTTCAAAATTCAGTGGTTGTTCTTCCTCCATCTCCTTTAATTATCCCTCCCGATAATAACACGAAGGCAAATATCAGTTATATTCCTAATTCAAATAACATCATACACAATGTTATACCACAACCCGATAATACGATAGATTTTGTCAACACTTCTAATGAAGAAGGACTGGTTACTAATGTTTCCAGTGAACTGATATTAATGCAAgGCACCAACAATGATTTAGATTCATCAACAGGCCCACTTACTCTTACTGGTATTTCTGGAGgagaattttcattaacacGAGATTTCTTAGTAATGCATGATGATCAGTTGAATGTCGTTAATTCATTGAGAAATCGAAACACAGAAACAATTGGAGATCCAGTGAATGATTCAAGTGAACAAGCATCtattaatataacaaattCCATTGACTTATCTCAAGAAACTATGATGAGAACAGATAATATTCTAAATGagaatcaagaaaaaatgtgTGTGGTAAATGATGATATAACAAATGTTCAAAAGTATCAAAAGCAAACGAAAAAGCTAAATGAAGATATTAATGCatGCTGTGAAGAATGTGACGGAACAGGTATAAAATCGGATGGATGTACATGTGAAAATGTTCAAACAATCGCTGATGAACCAGTACCATCACGTGCTAGAGCAACATTACCAGTATTATATCTtgctatcaataaattatcagcaattaatacaattaataatggTACTACAGCATTGTACGGTGTTTTTGCAAAACGAAGTATTAAACGAAGAACTCAATTCGGACCAATTGAAGGTATTTTATGTGATTATAACTCCGGAATATTGGAGAATGAATTGCCTCTTATTTATGAAACTGATGATGGGAAGTTACTTAGAGTTGatatttctaatgaaaataCTTCAAATTGGATGCGGTTTGTTCGACCAGCTTTGAATTATGAAGAGCAAAATTTAGTAATTTGTCAACAAAATGATggaattgtatttttaacaaCTCGGGAAATTTTAccaaaagaagaattaaaagcTGGACCAAGTCTTCAATACGCTATTCGTCGTAATTTAACTGTTTTTCAAGCAGATgtagttaaagaaaaaaaacaatctagTGAAAACGTAGTTTTATCTTATTCTGACTGTGacaatatatttgaaacaCCGCAAAAACTTGATGATTAtgctaataataatcataatgataattttactgacaaaaatgaaaaaaaactagataaaaaatattcaacattagaaacagataaattattgaaggTTGTTGATGATCAAACATTGCTTTATGCTTGTCCCCATTGtccaaaaatatttcctcGAAGCTATAGTTTACGACGACACATTCTGATGCATCCAAATTCCAAATCTTCTCGATATGAGTGTCAAAAATgcgatgaaaaatttttacatctttACAATCGTAACAGgcatatgaaaatatttcatagtgATGAAActagagaaaaagaaaatagccGAGAAAACACTGATGAATGGAAATGTATTTCTTGTAACTTGATATTTGGAAAGGCagctttattaaatatacacaAATTAGTGcatgaaaaagataataaaattaatattgacaaagaaaaatcatGTGCATGTCCACAATGTAGTATAGAGTTCAATACACAATACGATTTAATAAATCACGTCTCAAAGcatggaaaattaaaaataattaaattcgatAGTTCTAAAATGAATAGTTCTGGATCTTCATACAAATGTTTGATGTGTTATAAACGATTTGCGACAAAAGTACGTCTTCAACAACACTATTTAGTTCATGGTGCTGATGATCAAAAACCATTATCTTGTAACATttgttttaaaagatttatgaaCAATTCTGCTCTCTCTTGTCACTTAAAAACTCATCGACAAGATAAACAGATTTTCGAGTGTCCAATGTGTCGGCAATTATTTTGtcaagttttattattgaaagaacACATTGAAActcataaaaatgaagataatacATTTACTTGTCCTGATTGCAAGCGAACATTTACcaaatattcagtaataagAAAACATATTAAAGCACATCATTATGAGAGGAAACATAAATGTCAATTTTGTACGAAACGCTTTCCAACAGTTGACAAATTACGCATGCATTTACTTCGTCATTCCGATCATCGTGAATTTCACTGCGCAAATtgtgaaaaacaatttaagagaaaagataaattaaaagaacatATGACAAGAATGCataattcacaaaaaataaaacgggaacaaattatacaaaataatggacaaataaaaaaatttattccaaaagTCAATCCGACTGATTATAATAGATTTGTGTACAAATGTCATCAATGTCTAGTGGGTTTCAAACGACGAGGAATGTTAGTTAATCATTTGGCTAAAAGACACCCAGATATTTCACCAGATTCAGTACCAGAATTAAATTTACCAATTTTAAGACAAACTCGTGATTATTATTGCCAGTATTGtgataaagtttataaaagcAGTAGTAAAAGAAAAGCTCACATAGTGAAGAATCATCCAGGAGCTGCTTTACCTCCGAGTAATTTGCGTCAACGAGAAGTAGATTCACAAGGATCAATAAATTCTACGTTTAGTCAAACAGTTGGAAGTGTTACTACAATTCCACAAAATTGTCAATGGTGTCATAAACAGTATGCTAGTAAGGCAAAACTTTTACAACATCAACGTAAAAAACATTCAACATTAATGAAACCTGCTGACAAGATACCTCGTCCTCGAAATCGTTCGTCACAAAATCTTACATCAACAAATAcggacaataattttattatttctgaatACTTGCAAACTAAAAGTCGTTCAGAAAATTTGGATAACTTTACAAAATCAAAATCTGTAAAATTTGTTGATATTACAGACCATAATATTGAGCTTAGTCAACAAATTGTACGCATTCGAGACGTACGTTGA
Protein Sequence: MNLGAPQRVGAPEDPIDIISTINKSSETMENWSEERIVKNNNRLLFLTVEYVDDNQCKDFSKVFSPYEQVSFSPRASSPLSDFEHRVSPLDPNMSSTARYSPTPVQLSSFQNSVVVLPPSPLIIPPDNNTKANISYIPNSNNIIHNVIPQPDNTIDFVNTSNEEGLVTNVSSELILMQGTNNDLDSSTGPLTLTGISGGEFSLTRDFLVMHDDQLNVVNSLRNRNTETIGDPVNDSSEQASINITNSIDLSQETMMRTDNILNENQEKMCVVNDDITNVQKYQKQTKKLNEDINACCEECDGTGIKSDGCTCENVQTIADEPVPSRARATLPVLYLAINKLSAINTINNGTTALYGVFAKRSIKRRTQFGPIEGILCDYNSGILENELPLIYETDDGKLLRVDISNENTSNWMRFVRPALNYEEQNLVICQQNDGIVFLTTREILPKEELKAGPSLQYAIRRNLTVFQADVVKEKKQSSENVVLSYSDCDNIFETPQKLDDYANNNHNDNFTDKNEKKLDKKYSTLETDKLLKVVDDQTLLYACPHCPKIFPRSYSLRRHILMHPNSKSSRYECQKCDEKFLHLYNRNRHMKIFHSDETREKENSRENTDEWKCISCNLIFGKAALLNIHKLVHEKDNKINIDKEKSCACPQCSIEFNTQYDLINHVSKHGKLKIIKFDSSKMNSSGSSYKCLMCYKRFATKVRLQQHYLVHGADDQKPLSCNICFKRFMNNSALSCHLKTHRQDKQIFECPMCRQLFCQVLLLKEHIETHKNEDNTFTCPDCKRTFTKYSVIRKHIKAHHYERKHKCQFCTKRFPTVDKLRMHLLRHSDHREFHCANCEKQFKRKDKLKEHMTRMHNSQKIKREQIIQNNGQIKKFIPKVNPTDYNRFVYKCHQCLVGFKRRGMLVNHLAKRHPDISPDSVPELNLPILRQTRDYYCQYCDKVYKSSSKRKAHIVKNHPGAALPPSNLRQREVDSQGSINSTFSQTVGSVTTIPQNCQWCHKQYASKAKLLQHQRKKHSTLMKPADKIPRPRNRSSQNLTSTNTDNNFIISEYLQTKSRSENLDNFTKSKSVKFVDITDHNIELSQQIVRIRDVR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00316985;
90% Identity: iTF_00316985;
80% Identity: -