Basic Information

Insect: Chelonus formosanus
Gene Symbol: PRDM10
Assembly: GCA_028641665.1
Location: CM054006.1:23340313-23343927[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2.9 3.3e+02 2.4 0.2 2 16 482 496 481 497 0.87

2 14 4.1e-08 4.7e-06 27.1 0.7 1 23 539 561 539 561 0.98

3 14 0.0086 1 10.3 4.1 1 23 569 592 569 592 0.97

4 14 0.036 4.2 8.3 0.1 2 23 610 631 609 631 0.96

5 14 0.00054 0.062 14.1 0.9 2 23 646 667 645 667 0.95

6 14 0.00044 0.051 14.4 2.0 1 23 687 709 687 709 0.98

7 14 0.0094 1.1 10.2 3.5 2 23 718 739 717 739 0.96

8 14 0.007 0.81 10.6 0.9 1 23 746 768 746 768 0.98

9 14 0.00015 0.017 15.9 3.2 1 23 775 797 775 798 0.95

10 14 0.0013 0.15 12.9 3.9 1 23 803 825 803 825 0.98

11 14 0.00018 0.021 15.5 4.4 1 23 831 854 831 854 0.96

12 14 0.0015 0.17 12.7 1.7 1 23 888 911 888 911 0.97

13 14 0.00012 0.013 16.2 2.0 1 23 933 956 933 956 0.95

14 14 0.0018 0.2 12.5 3.4 3 23 995 1016 993 1016 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2.9	3.3e+02	2.4	0.2	2	16	482	496	481	497	0.87
2	14	4.1e-08	4.7e-06	27.1	0.7	1	23	539	561	539	561	0.98
3	14	0.0086	1	10.3	4.1	1	23	569	592	569	592	0.97
4	14	0.036	4.2	8.3	0.1	2	23	610	631	609	631	0.96
5	14	0.00054	0.062	14.1	0.9	2	23	646	667	645	667	0.95
6	14	0.00044	0.051	14.4	2.0	1	23	687	709	687	709	0.98
7	14	0.0094	1.1	10.2	3.5	2	23	718	739	717	739	0.96
8	14	0.007	0.81	10.6	0.9	1	23	746	768	746	768	0.98
9	14	0.00015	0.017	15.9	3.2	1	23	775	797	775	798	0.95
10	14	0.0013	0.15	12.9	3.9	1	23	803	825	803	825	0.98
11	14	0.00018	0.021	15.5	4.4	1	23	831	854	831	854	0.96
12	14	0.0015	0.17	12.7	1.7	1	23	888	911	888	911	0.97
13	14	0.00012	0.013	16.2	2.0	1	23	933	956	933	956	0.95
14	14	0.0018	0.2	12.5	3.4	3	23	995	1016	993	1016	0.96

Sequence Information

Coding Sequence: atgaatttaggGGCCCCTCAGAGAGTGGGGGCCCCTGAAGACCCAATCgatattatttcaacaattgataaatcatCTGAAACAATGGAAAACTGGAGTGAGGAAcgtattgttaaaaataacaatcgtttattatttttgactgTTGAATATGTAGATGATAATCAATGTAAAGACTTCTCTAAAGTTTTTTCACCATATGAACAAGTGTCTTTTTCACCTAGGGCTTCCTCTCCACTCTCTGATTTTGAACACAGAGTCAGTCCTTTAGATCCCAATATGAGTTCAACAGCAAGATATTCTCCTACACCTGTACAACTGTCAAGTTTTCAAAATTCAGTGGTTGTTCTTCCTCCATCTCCTCTAATTATCCCTCCCGATAATAACACGAAAGCAAATATCAGTTATATTTCTAATTCAAATAACATAATACACAATGTTATACCACAACCAGATAATACGATAGATTTTGTCAACACTTCTAATGAAGAAGGATTGGTTTCTAATGTTTCCACTGAATTGATATTAATGcaaggTACCAACAATGATTTAGATTCATCAACAGGCCCACTTACTCTTACTGGTATTTCTGGAGGAGAATTCTCATTAACACGAGATTTCTTAGTAATGCATGATGATCAGTTAAATGTCGTTAATTCATTGAGAAATCGAAATACAGAAACAATTGGAGATCCAGTGAATGAACAAACATCTATCAATGTAACTAATTCCATTGAATTATCTCAAGAAAATATAATGAGAACCGATAATATTCTAAATGAGAATCAAGGAAAGACGTGTGTGGTAAATGATGATATAACAaatgttcaaaaatatcaaaagcaaataaaaaaaccagATGAGGACATTAATGCATgcTGTGAAGAATGTGACGGAACAGGCATAAAATCGGATGGATGTACATGTGAAAATGTTCAAACAATCGCTGATGAACCAGTACCATCACGTGCTAGAGCAACATTACCAGTATTATATCTtgctatcaataaattatcagcAATCAATACAACTAATAACAGTACTACATTATTGTATGGTGTTTTCGCAAAACGAAATATTAAACGAAGAACTCAATTCGGACCAATTGAAGGTATTTTATGTGATTATAACTCTCAACTATTGGAAAATGAATTGCCTCTCATTTATGAAACTGATGATGGGAAGTTACTTAAAATTGAtgtttctaatgaaaatacaTCAAATTGGATGCGGTTTGTTCGACCAGCTTTAAATTATGAAGAgcaaaatttagttatttgTCAACAAAATGATggaattgtatttttaacaactcgagaaattttaccaaaagaagaattaaaagcTGGGCCAAGTCTTCAGTATGCTATTCGTCGTAATTTAACTGTTTTTCAAGCAGATGtagttaaagaaaaagaaaaatctagTGAAAATGTAGTTTCATCTTGTTCTGACTGTGACAATATATTTGAAACATCGCAAAAACTTGATGattatactaataataatcgtaatgataattttactgacaaaaatgaaaaaaaactagataaaaaatattcgacaTTAGAAacagataaattattgaagGTTGTTGATGATCAAACATTGCTCTATGCTTGTCCTCATTGCCCAAAAATATTTCCTCGAAGCTATAATTTACGACGACACATTCTGATGCATCCAGGTTCTAAGTCCTTTCGATATGAGTGTCAAAAATgcgatgaaaaatttttacaccttTACAATCGTAATAGgcatatgaaaatatttcatagtGATGAAActagagaaaaagaaaatagccGAGAAAACACTGATGAATGGAAATGTAGTTCTTGTAACTTGATATTTGGAAAGGCagctttattaaatatacacaAATTAGTGcatgaaaaagataataaaattaatattgacaaAGAAAAATCATGTGCATGTCCACAATGTAGGATAGAGTTCAATACAcaatatgatttaataaatcacGTCTCAAAGCATggaaaattaaacataattaaattcgATAGCTCTAAAATAAATGGTTCTGGATCTTCATACAAATGTATGATGTGTTACAAACGATTTGCAACAAAAGTACGTCTTCAACAACATTATTTAGTTCATGGTGCTGATGATCAAAAACCATTATCTTGtaacatttgttttaaaagatttatgaACAATTCTGCTCTCTCTTGTCACTTAAAAACTCATCGACAAGATAAACAGATTTTCGAGTGCCCAATGTGTCGGCAATTATTTTgtcaagttttattattgaaagaacACATTGaaacacataaaaataaagataatacatTTACTTGTCCTGATTGTAAGCGAACATTTACCAAATATTCAGTGATAAGAAAACATATTAAAGCACATCATTATGAAAGGAAACATAAATGTCAATTTTGTACGAAACGCTTTCCAACGGTTGACAAATTACGCATGCATTTACTTCGTCATTCTGATCATCGTGAATTTCACTGTGCAAATtgtgaaaaacaatttaaaagaaaagataaattgaaagaacATATGACAAGAATGCATAATTCACAGAAAATAAAACGGGAAcaaattatacaaaataatggacaaataaaaaaatttattccaaaagtCAATCCGACTGATTATAATAGATTTGTGTACAAATGTCATCAATGTCTAGTGGGATTTAAACGACGAGGAATGTTAGTCAATCATTTAGCTAAAAGACACCCAGATATTTCACCAGATTCAGTACCAGAATTGAATTTACCAATTTTAAGACAAACTCGTGATTATTATTGCCAGTATTGtgataaagtttataaaaGCAGTAGTAAAAGAAAAGCTCATATAGTGAAAAATCATCCAGGAGCTGCTTTACCTCCGAGTAATTTGCGTCAACGAGAAGTAGATTCACATGGATCAATAAATTCTACGTTTAGTCAAACAGTTGGAAGTGTTACTACAGTTCCACAAAATTGTCAATGGTGTCATAAACAGTATGCTAGTAAGGCAAAACTTTTACAACATCAACGTAAAAAACATTCAACATTAATGAAACCTGCTGACAAGATACCTCGTCCTCGAAATCGTTCGTCACAAAATCTTGCATCAACAAATAcggacaataattttattatttctgaatacCTGCAAACTAAAAGTCGTTCAGAAAATTTGGATAGCTTTACAAAATCAAAATCTGTAAAAGTTGTTGACATTACAGACCATAACATTGAGCTTAGTCAACAAATTGTACGCATTCGAGACGTACGTTGA
Protein Sequence: MNLGAPQRVGAPEDPIDIISTIDKSSETMENWSEERIVKNNNRLLFLTVEYVDDNQCKDFSKVFSPYEQVSFSPRASSPLSDFEHRVSPLDPNMSSTARYSPTPVQLSSFQNSVVVLPPSPLIIPPDNNTKANISYISNSNNIIHNVIPQPDNTIDFVNTSNEEGLVSNVSTELILMQGTNNDLDSSTGPLTLTGISGGEFSLTRDFLVMHDDQLNVVNSLRNRNTETIGDPVNEQTSINVTNSIELSQENIMRTDNILNENQGKTCVVNDDITNVQKYQKQIKKPDEDINACCEECDGTGIKSDGCTCENVQTIADEPVPSRARATLPVLYLAINKLSAINTTNNSTTLLYGVFAKRNIKRRTQFGPIEGILCDYNSQLLENELPLIYETDDGKLLKIDVSNENTSNWMRFVRPALNYEEQNLVICQQNDGIVFLTTREILPKEELKAGPSLQYAIRRNLTVFQADVVKEKEKSSENVVSSCSDCDNIFETSQKLDDYTNNNRNDNFTDKNEKKLDKKYSTLETDKLLKVVDDQTLLYACPHCPKIFPRSYNLRRHILMHPGSKSFRYECQKCDEKFLHLYNRNRHMKIFHSDETREKENSRENTDEWKCSSCNLIFGKAALLNIHKLVHEKDNKINIDKEKSCACPQCRIEFNTQYDLINHVSKHGKLNIIKFDSSKINGSGSSYKCMMCYKRFATKVRLQQHYLVHGADDQKPLSCNICFKRFMNNSALSCHLKTHRQDKQIFECPMCRQLFCQVLLLKEHIETHKNKDNTFTCPDCKRTFTKYSVIRKHIKAHHYERKHKCQFCTKRFPTVDKLRMHLLRHSDHREFHCANCEKQFKRKDKLKEHMTRMHNSQKIKREQIIQNNGQIKKFIPKVNPTDYNRFVYKCHQCLVGFKRRGMLVNHLAKRHPDISPDSVPELNLPILRQTRDYYCQYCDKVYKSSSKRKAHIVKNHPGAALPPSNLRQREVDSHGSINSTFSQTVGSVTTVPQNCQWCHKQYASKAKLLQHQRKKHSTLMKPADKIPRPRNRSSQNLASTNTDNNFIISEYLQTKSRSENLDSFTKSKSVKVVDITDHNIELSQQIVRIRDVR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00317651;
90% Identity: iTF_00317651;
80% Identity: -