Cins003972.1
Basic Information
- Insect
- Chelonus insularis
- Gene Symbol
- -
- Assembly
- GCA_013357705.1
- Location
- NW:315851-318139[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.1e-12 3.2e-09 35.6 0.0 1 38 15 52 15 56 0.94 2 2 3.5 2.7e+03 -2.6 0.0 22 28 166 172 166 182 0.64
Sequence Information
- Coding Sequence
- ATGCCTcgaaattataaaagaaaaacaaacaGACAAAGTTGGTCAGAAGAAAGCATGAAAAATGCAATAATAGATGTAACCAGTGGAAAATGTGGTTTCAAAAAAGCATCACAAGTCTATGGAGTTCCAAAATCCACATTAGAATAtcgtataaaaatttatcgaaatgaaaaagatttagAAGTTGCAGCTCGAAAAGGTTTAGGTAGATTTAAATCAGTTTTCAGTctcgaaaacgaaaaattaattattgaatatattaaattattagagcAACGATTATTTAGTTTAAGTCATAGAGATATAAGAAGTTTGGCTTACGAAATGgctgataaatataatttacaaaataacttCAATGAAGAAACTAAATTAGCAGGAAAGGATTGGCTTCATAACTTTCTTAATCGTCACAATGACCTGTGTTTGGATAAAAAACctcttttagatttttatgatattttagaaAGACTAATTGATCAAAATTCTATTACTGCTTCGCGAATATATAATGTTGGTGAAGTGAGCATTACCACAGCTGCTACACGTCAATCACAAATTTTAACAACcaaaaatacaaaacaaaTACGAAATTTCAATCTTGTTGATGAAGAACAAGTAACAACAATATTGTGTTTTTCATCTACAGGATACTACGTACCACCGCTCTTTATATTTCCAAGAGTTCAGATGAAAGCAGAACTTTTAGTAGGTTTTCCTCCTGACTCTGTAGTTGTTTGTCATCCAACTGGTCTAATTCAAAgtgaaatatttgttgaatggctccaacattttatttctcaagttCATCCCTCCAAAGAGCAACCAgttttgttattgttaaatGGTCATACAAATTATTCCAAAAGTTTTCAATTCCTCGAACTTGCTAAGAACAATGGTATAATACTGCTCTCATTTCCTTTGGATTTTATACATACAATGCAACCACTGTACGTTAGTTTTGTAGCTCctttaaattcatattacACTGAAGAAGTTACGACATGGTTGAATAATCATCCTGAGTGTGTTGTCACACAATATCAAATAGCAGAACTTTTCGGCAACGCTTATCTAAAAGCTGCATCTTTATTCAATGCAATGATAGGATTTAAAAATACTGGAATCCAACCACTAAATCGATatactttatataaaaatgattatgcaCCTTCTGAAATGACTAAATGGCTTTTAGACCAAGCAGAAAGAAATTTGTCGTTAGTTAAAACAGAAAATGACAAAGTATCATTTTGTGATCTTACTCAGTGTTAG
- Protein Sequence
- MPRNYKRKTNRQSWSEESMKNAIIDVTSGKCGFKKASQVYGVPKSTLEYRIKIYRNEKDLEVAARKGLGRFKSVFSLENEKLIIEYIKLLEQRLFSLSHRDIRSLAYEMADKYNLQNNFNEETKLAGKDWLHNFLNRHNDLCLDKKPLLDFYDILERLIDQNSITASRIYNVGEVSITTAATRQSQILTTKNTKQIRNFNLVDEEQVTTILCFSSTGYYVPPLFIFPRVQMKAELLVGFPPDSVVVCHPTGLIQSEIFVEWLQHFISQVHPSKEQPVLLLLNGHTNYSKSFQFLELAKNNGIILLSFPLDFIHTMQPLYVSFVAPLNSYYTEEVTTWLNNHPECVVTQYQIAELFGNAYLKAASLFNAMIGFKNTGIQPLNRYTLYKNDYAPSEMTKWLLDQAERNLSLVKTENDKVSFCDLTQC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00316696;
- 90% Identity
- iTF_00316696;
- 80% Identity
- -