Cfor012350.1
Basic Information
- Insect
- Chelonus formosanus
- Gene Symbol
- -
- Assembly
- GCA_028641665.1
- Location
- CM054004.1:10737207-10738484[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.5e-12 7.1e-09 35.6 0.0 1 38 15 52 15 56 0.94 2 2 9.5 7.1e+03 -2.9 0.0 22 28 166 172 166 181 0.73
Sequence Information
- Coding Sequence
- atgcctagaaattataaaagaaaaacaaatagaCAAAGTTGGTCAGAAGAAAGCATGAAAAATGCAATTATAGATGTAACCAGTGGAAAATGTGGTTTCAAAAAAGCATCACAAGTATATGGAGTTCCAAAATCTACATTAGAATATcgcataaaaatttatcgaaatgaaaaagatttagAAGCTGCAGCTCGAAAAGGTTTAGGTAGATTCAAATCAGTTTTCAGTCTCGAAAACGAAAAAgtcattattgaatatattgaattattaaaacaacGATTATTTAGTTTAAGTCATAGAGATATAAGAAGTTTGGCTTACGAAATGgctgataaatataatttacaaaataactTCAATGAAGAAACTAAATTAGCAGGGAAGGATTGGCTTTATAGCTTTCTTAATCGTCACAGTGACCTGTGTTTGGACAAAAAACCTCTTACAGATTTCTATGATATTTTAGAAAGACTAATTGATCAGAATTCTATCACTGCTTCGCGAATATATAATGTTGGTGAAGTAAGCATCACCACAGCTGCTACATGTCAATCACAAATTTTAACAACcaaaaatacaaaacaaaTAGGAAATTTCAATCTTGTTGATGATGAACGAGTAACAACAATATTGTGTTTTTCATCTACGGGATACTACGTACCACCGCTCTTTATATTTCCAAGAGTTCAGATGAAAGCAGAACTTTTAGTAGGTTTTCCTCCTGACTCTGTAGTTGTTTGTCATCCAACTGGTTTaattcaaagtgaaatatttgttgaatggctccaacattttatttctcaagttCATCCCTCCAAAGAGCAACCagttttgttattgttaaacGGTCatacaaattattcaaaaagttttcaattcCTCGAACTTGCTAAGAACAATGGTATAATGCTGCTCTCATTTCCTTTGGATTTTATACATACAATGCAACCACTGTACGTCAGTTTTGTGGGTCctttaaattcatattacaCTGAAGAAGTTACAACATGGTTGAATAATCATCCTGAGTGTGTTGTCACACAATATCAAATAGCAGAACTTTTCGGCAACGCTTATCTAAAAGCTGCATCTTTATTCAACGCAATGATAGGGTTTAAAAATACTGGAATCCAACCACTAAATcgacatattttatataaaaatgattatgcaCCTTCGGAAATGACTAAATGGCTTTTAGACCAAgcagaaataaatttgtcattagTTAAAACAGAAAATGACAAAGTATCATTTTGTGATTTTACTCAGAGTTAG
- Protein Sequence
- MPRNYKRKTNRQSWSEESMKNAIIDVTSGKCGFKKASQVYGVPKSTLEYRIKIYRNEKDLEAAARKGLGRFKSVFSLENEKVIIEYIELLKQRLFSLSHRDIRSLAYEMADKYNLQNNFNEETKLAGKDWLYSFLNRHSDLCLDKKPLTDFYDILERLIDQNSITASRIYNVGEVSITTAATCQSQILTTKNTKQIGNFNLVDDERVTTILCFSSTGYYVPPLFIFPRVQMKAELLVGFPPDSVVVCHPTGLIQSEIFVEWLQHFISQVHPSKEQPVLLLLNGHTNYSKSFQFLELAKNNGIMLLSFPLDFIHTMQPLYVSFVGPLNSYYTEEVTTWLNNHPECVVTQYQIAELFGNAYLKAASLFNAMIGFKNTGIQPLNRHILYKNDYAPSEMTKWLLDQAEINLSLVKTENDKVSFCDFTQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00317390;
- 90% Identity
- iTF_00317390;
- 80% Identity
- -