Cfor014991.1
Basic Information
- Insect
- Chelonus formosanus
- Gene Symbol
- -
- Assembly
- GCA_028641665.1
- Location
- CM054005.1:5358058-5361941[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0071 0.82 10.6 2.2 1 23 340 362 340 362 0.97 2 18 0.011 1.2 10.0 0.7 2 23 397 418 396 418 0.97 3 18 0.017 2 9.3 1.5 3 23 513 533 511 533 0.93 4 18 7.9e-05 0.0091 16.7 1.1 1 23 581 603 581 603 0.99 5 18 0.00021 0.024 15.4 2.2 1 23 608 630 608 630 0.96 6 18 0.0062 0.72 10.7 0.2 1 21 636 656 636 660 0.92 7 18 0.0049 0.56 11.1 3.0 2 20 735 753 734 756 0.94 8 18 0.00017 0.02 15.6 4.8 1 23 804 826 804 826 0.97 9 18 0.00023 0.027 15.2 0.7 1 20 831 850 831 852 0.94 10 18 0.039 4.6 8.2 0.6 2 23 863 884 863 884 0.97 11 18 2.4e-05 0.0027 18.4 0.6 2 23 923 944 922 944 0.97 12 18 2.2e-05 0.0025 18.5 1.6 1 23 949 971 949 971 0.95 13 18 0.00026 0.03 15.1 0.9 1 23 977 999 977 999 0.98 14 18 6.5e-06 0.00076 20.1 0.4 1 23 1016 1038 1016 1038 0.95 15 18 1.2e-06 0.00014 22.4 0.3 1 23 1044 1066 1044 1066 0.99 16 18 2.3e-05 0.0027 18.4 0.3 1 23 1072 1094 1072 1094 0.98 17 18 0.00047 0.054 14.3 6.2 1 23 1100 1122 1100 1122 0.96 18 18 0.0088 1 10.3 0.4 1 20 1128 1147 1128 1149 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTGGTTATTGATACTACAGAGCCTCAACAAAATGATGAAGACGCTATGGAAGTTTGTCGTGTATGTTTGGTTGGCAATCACATAATGAGAGATCTCTTTGTAGAAAGCGACGTCATCTCATTATCAACTAAAGCCATGAGCTTCGCTAGTGTAAAGatACTACCTGGTGATGGCTTGCCAACTCAGGTTTGCTGCGATTGTGCTGATAAACTTGAGGCTGCATATGAGTTTAAATTACAAGTTGAACAAGCTGATAGTTTACTGagagaaaaatatgataactTTAACATCAAAGAAGaactcatttttaatgaagtagAAGTACGTCCAGATGATGAAAGACATGAAGAAGTTACTGAAAGTCATCATGTTGATGCACATTATGAAATAGCGACTGACAATTTAAATTCTGATATAACTACTGTAAAACCTACATTATTAAAAGATCATTTGGCTTTACTGGAGGTACAGAAACTTTCTCACCAAAGTGATTATTCCATACAGCATAATCATATTGTTCAAAATCCTAATCATATAGAAACAGAAGAACAATATATTGTTCAACAAGATGATCAGAGTACCCGTCagataatgaatgaaaatataaattcaacaaaTGATGAAAATCATGACAAATCTGAAGTCATGCATGAAGAATCTGAAGGAATAACCATTGAAGAACATAATTATATGGTCCAACAAGGTTATAGTTTATCAAGTGAACAAGAACacgaattaataaatcaacaagTTGATGATAATGACACTACAGAATATTTAACTATAATAGGAGAAGACGAAAGATCCGTGAAAGAAACAGAAGGACATTTGGATAATATGGATAGTGAAATGACTGAAGTATATGTTCaagaaaaatgtgaaaataatacagaaaataaacataaattaattcaaaatgatGGATCTAAtgaggaaaattattttggaaatcTTAATTTAAGTAGTCGACTATCACATGGCCAAGAAAATAAGGAAGATAAAGTGTTTTTTATGTGTTACTTGTGTGATAGACAATTTATATCGAAGGATATATTAAAAGAACATATGCATTCTCATGAAGAAGTGAGACAAGCATTAAGTTTGAAAAAGACTCCAGAAAAATCGGTAAAAAATTTGCCGCCCATTAAAGGACAACCTCCATCTGGAAAAAAAGCTAATAAGTGTCCTTATTGTGGTAAAGAATATTTGTAtgtaatttcattcaaaaaacaCATTAAACAGCATCAAAATATGATGCAGTTaccaaatgaaaatgaattgaaagaCTTTGTAGATTCAATCTTACAAGATGACAATTCATTTGATTCAAATAactttgataataatgatactttcgaaattatttctcatgaaaaGAATGATTCTGAGAATCAAAATAGTCACAACATGAAAGAAATACACGACAATGATTCAAGTCATAAATCGAATcagattgaaatttattttgatggtACTAATGATCAAGTAGTATGTAAAAATGAAGAGaagttattgataaaacatttatgCAACATCTGTAATCAAGAATTCgatgattttgaaaaactaAAAGATCACCGTACCGCTCATATACTTGAAGGTACTGCGAGTGAAGAAGATTTTAAAGATggtttagaaaatatttgtaataaagaaTTCAGGACAGATAAAAAACCAACATtgaatgaagataataaacCTACAATGGAGATTAAGAAAGAATCTACTGACTTCAAGTGTcctaattgtaatttattgtttgGCAGTAAAAGATCTCTAACGAAACATTTGGAAACTCATGAAACTGTTCGATATCGCTGTAAAATTTGTGGAGATGAATTTACTCATAAAGAATATCTTCGTAAACATGCTGAACAGCACACTCgagtaaaatcatttaaatgtacTGAATGTAGTATAATTTTTGCTAATGAATTGACTttaagaaatcatttaatagCAACGAATCATAAGACTACTATTAAGGGAGAGGAATATGATccaaataaaagaataaaaagagtaGCAGCTAAAGCAGCACAAAagatcattgataaaataagcACGGAAGTTGGTTTAGAAGATTCTGaaaaagatgatgataatgatgaatttatggTTAAAATTGAATCTATAGGTACAAAAGCTGGAGAAAAATCTCAAGCAAAGAAAgtgactaataaaaaaaatctggaATGTGAAACTTGTGGTAAGAAATGTATTTCTAAACAAGCTTTAGCTAAACACATGGATTGTCATGTAAAGAACGAAAAGGctgataaattacaaaataaaatggatCCTAAAGAAtcgtcaaaaaatatttttggtgaTGATAGAGATGATGACGacgacgatgatgatgattttgatGGTGGATTAGATTGGCCTATGGACAATCATGAATGTTCAACATGCAAAAAAAGATATAGTACCAAAAAATCTTTACTTCGGCATCAACTTCTTCATGAAGAACCAAATTTTGAATGTGATATTTGTAATGTGAAGTTTTACAGAAAAGATAAGTTAAAGGCACATTATGATAAATGTTCTGAAAAAAATCCTAATCAAGTAAGAAAGTGTAATATTTGTGGAGATACCTTTgagaataatgaaatattacgTGAACATAGGTCTAAACATGTTGATGAAGGTATTTTAACAGAAGAGGATCTACGAGAGTTGGAGCCAGGTTCTGAAGATAGAAAACCAGGGGAAAAAGTTCCAAGAAAGCGAAGAACTGACATTGTTGGATTGGAATGTACTGAATGTAATAAACAGTACACATCACGAAAAGGTCTTTTAAGACACATTCAAGTTCATGAAGGCAAAAAATATCTCTGCGATATATGTCCCAAAAAATTCTACCGTCGTGAACATTTAAAGATTCATGTTGCAAAACATAACATGGTAAAACCTTATAAATGCAGTCGTTGTTCTAAACGATTTATCAAAGAGGAACAACTAGCTGCGCATGTAACAAAGCATGAgagaaatttcaagaaaaataaggATTCTGATAGCACTGCCAAAAGATTCCTTTGTGAAATTTGTTCAAAGAGTTTTACACAGTCAACAACTTTAGTTGCCCATTTAAGAGCTCATAATGGTATCAAGCCATATGTTTGTGAAGTTTGTGCTAGACCTTTCACAACCAATGCTTATTTGAAGATGCATATGCGAACACACACTCAAGAAAGACCTTACAGCTGTCAATATTGCTCGAGAGCTTTCGCTCGAGCTGATACCTTGGCTAACCACTTGACCTCACATACAGGTGAAGCCAAATATCACTGCAAATATTGTCCAAAGCATTTCCGAAGGCTTAAATCCTTGAAAGAACATGTATTCATTCATACAGGACAACGACCCTATGCTTGCCCCACTTGTGATAGAAGATTCAATAATAATGGGAGTCGTTATGCTCATAGTAAGAGATGCAAACAAAATATGCTCCAGAATCAAGCGAGACAAAACCAGATTCAAACTCAAACTCAAGCCGTTGCTCCATCTCCGAGCCCCGTTCAGCCAACAATTCGCCTTGCGCAACCAGTAGGACCAACGATGCAAGTAGTTCAATCGAAGAATATTAAGACTATTACGATTACGAGACAACAAGATCAAGTTGGTACACACCAGATCATGCAGCATCAAGAAATACTTATGCCTCTTATCTTACCTCTAACTGTTACTTTGactgatgttgatgatgaagtTATTCTTCCTGAaggaacaaaaatattcacaacCACGTAG
- Protein Sequence
- MDAVVIDTTEPQQNDEDAMEVCRVCLVGNHIMRDLFVESDVISLSTKAMSFASVKILPGDGLPTQVCCDCADKLEAAYEFKLQVEQADSLLREKYDNFNIKEELIFNEVEVRPDDERHEEVTESHHVDAHYEIATDNLNSDITTVKPTLLKDHLALLEVQKLSHQSDYSIQHNHIVQNPNHIETEEQYIVQQDDQSTRQIMNENINSTNDENHDKSEVMHEESEGITIEEHNYMVQQGYSLSSEQEHELINQQVDDNDTTEYLTIIGEDERSVKETEGHLDNMDSEMTEVYVQEKCENNTENKHKLIQNDGSNEENYFGNLNLSSRLSHGQENKEDKVFFMCYLCDRQFISKDILKEHMHSHEEVRQALSLKKTPEKSVKNLPPIKGQPPSGKKANKCPYCGKEYLYVISFKKHIKQHQNMMQLPNENELKDFVDSILQDDNSFDSNNFDNNDTFEIISHEKNDSENQNSHNMKEIHDNDSSHKSNQIEIYFDGTNDQVVCKNEEKLLIKHLCNICNQEFDDFEKLKDHRTAHILEGTASEEDFKDGLENICNKEFRTDKKPTLNEDNKPTMEIKKESTDFKCPNCNLLFGSKRSLTKHLETHETVRYRCKICGDEFTHKEYLRKHAEQHTRVKSFKCTECSIIFANELTLRNHLIATNHKTTIKGEEYDPNKRIKRVAAKAAQKIIDKISTEVGLEDSEKDDDNDEFMVKIESIGTKAGEKSQAKKVTNKKNLECETCGKKCISKQALAKHMDCHVKNEKADKLQNKMDPKESSKNIFGDDRDDDDDDDDDFDGGLDWPMDNHECSTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPNQVRKCNICGDTFENNEILREHRSKHVDEGILTEEDLRELEPGSEDRKPGEKVPRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMVKPYKCSRCSKRFIKEEQLAAHVTKHERNFKKNKDSDSTAKRFLCEICSKSFTQSTTLVAHLRAHNGIKPYVCEVCARPFTTNAYLKMHMRTHTQERPYSCQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKHFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNMLQNQARQNQIQTQTQAVAPSPSPVQPTIRLAQPVGPTMQVVQSKNIKTITITRQQDQVGTHQIMQHQEILMPLILPLTVTLTDVDDEVILPEGTKIFTTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00317617;
- 90% Identity
- iTF_00317617;
- 80% Identity
- -