Cver019961.1
Basic Information
- Insect
- Cheilosia vernalis
- Gene Symbol
- stc
- Assembly
- GCA_949126925.1
- Location
- OX421361.1:4266343-4269543[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.9 3e+04 -4.0 1.6 15 19 326 330 325 330 0.81 2 13 0.054 8.7e+02 0.9 0.2 4 10 359 365 358 366 0.95 3 13 5.5e-07 0.0088 16.9 15.1 1 19 371 388 371 388 0.93 4 13 1.9e-06 0.03 15.2 12.0 3 18 426 441 424 442 0.91 5 13 0.74 1.2e+04 -2.7 2.0 9 13 448 452 446 455 0.60 6 13 1.2e-07 0.0019 19.0 18.6 1 19 482 500 482 500 0.98 7 13 0.01 1.7e+02 3.2 15.6 4 18 548 562 541 563 0.86 8 13 0.036 5.8e+02 1.5 11.8 1 11 603 613 603 625 0.91 9 13 4.4e-10 7.1e-06 26.7 15.5 1 18 630 647 630 648 0.97 10 13 1 1.6e+04 -3.2 1.3 6 10 677 681 675 683 0.65 11 13 2 3.2e+04 -6.0 10.2 10 18 695 704 684 705 0.78 12 13 3.8e-08 0.00062 20.5 14.3 1 16 741 756 741 766 0.92 13 13 5.7e-07 0.0092 16.8 10.7 1 18 773 791 773 792 0.89
Sequence Information
- Coding Sequence
- ATGTCGGACACGTTTTATCGGTACCACGATGCAGCTGGTGGCAGTGGTAGCAACAGTAGTGCtgcaaccaacaacaacaattatGTAAATTTCAACCAGTTCATGATGCAGCACAATATCATTGGCGGTGGATCGGGTGATGCATCGCCAGCAACCTCAACAAATCCATTTCATTACAACGGTGGATCACAATACGATCAACAATATTCAGTCGATGAGTTCTACTTGAATGGGAGTTCACGTACTGGCGGAACGTCGAGGTATAACCATCAGCCAAGCTATAGTTACTCCAATTCGACACTTCATGCGACCGCGGCTGAGTTTGTTCCCAGGTTCTCCAGCTTGTCGCTGGACGAGACTGCTGTGAGTAAACCAAATGACGTGGCAGTCACTCCAATACAAACCGCAGCTGACGTTCAGAATGCGAACGCCAACAGCAATGGAGTGAATGGTCCATCGAGCAGTAAATCAAGCTCAAATCACTTTGAATCGTCTCTAAATAAGTCTCCTCCACAACGTTACACCGGTGCCACGGGTAAGAATCGCGACTCCACCTCAAGGGGCAGTTCGGCTGTGAACGCCAATTCGTCTCGACGACAGAATGGCCGTGACTATCACAGAAATCAACGGTACGATAACAATCGCAGCAACAAGCGCAGGGATGACTGGAATAGAAACCGCGATCGTGTGAATGCCTTCAGGGAGGAGAAATACACAATTGAGAATGGCAACGACAGTCCGCTTAACTCGCCCGAGAAGAAATCTCCCAAGAAGCCACAACCGGAGAACGAGAAACTGTCCCAGAGGGAAAAACTCATCCGAGAGATCGAGGCACGTCGCTTAGAGTGCCTTGTCTGCGTGGAGCCAATCAAGAGTCACAACCCGGTTTGGTCCTGTCACAACTGCTACCACATTCTCCATCTTAACTGCATCATCAAGTGGGCATCGAGCTCTAAATCTGAGGACGGCTGGCGCTGCCCCGCATGTCAAAACGTTGAAAAGGACGTGCCACGAGACTACTTCTGCTTCTGTGGGACTGTAAAGAATCCACAACTGAATCGCAACGACATTGCACACAGTTGCGGAGAAGTTTGTGGTCGCATCGAGGGATGCTCCCACGCCTGCACCCTCCTATGTCATCCGGGACCCTGTCCCCCGTGTCAAGCAAACGTAACACGAGAATGCGGCTGTGGTAAGACCACCAAAACCATGCAGTGCTATCTAAAGGAGTCTATCGAGTGTGACGCGAAATGCCAGAAGCTGCTCAACTGCGAGCTGCACTCGTGTGAAGATAGCTGTCATGAGGGCAAGTGCAAGCCCTGTGATCAGAAGGTTGATCAGAAGTGCCACTGCGGCAAGCACGATCGTCAGGTTGCATGCACAAGAGACTCGCACGAAAAGAAGAACTATTCTTGTGGCAAGCCTTGCGGCAAAGACTTGAGCTGCGGAAATCACAAGTGTAAAGACTGCTGTCACGCTGGAGAATGCCGCCCGTGCAAGTTCAGTCCGGAGATAGTCACCTCATGCCCGTGTGGAAAGATGCCGGTGGCACTCGAACAGAGAAAGTCGTGCCTGGACCCGATTCCCGTCTGCGACGGCATCTGCAGCAAGACACTCCGATGTGGCAAGGCCGCCCATCCTCATCACTGCACAAGCAAGTGCCACTTGAACAACTGTCCGCCGTGCAACAAGCAAACGGCCGTCAAGTGTAGGTGTGGACACATGGATCAGATGATAAAATGCCGACAACTGTCGACTAGAGCCGACGATGCACGCTGCAAGAAGCGCTGCGTAAAAAAACGCTCGTGCGGCAAACACAAGTGCAGCCAAGAGTGCTGCATCGACATTGACCACATCTGCCCGATGCCCTGCAACTACACTCTCTCGTGTGGCAAGCACAAGTGCGACCAACCCTGTCATCGGGGCAATTGTCCTCCATGCTATCGCAGCTCCTTTGAGGAGCTGTACTGCGAATGTGGCGCTGAGGTAATCTACCCACCGGTACCATGCGGCACAAAGAAACCACCGTGCAAGCGGCCGTGTTCTCGCCAACATCCGTGCGACCATCCAGTTCAGCACAATTGCCATTCGGCAGCCAACTGTCCACCGTGCATGATGTTCACCACGAAATGGTGCTTTGGACAGCATGAGCAGCGTAAAACCATTCCATGCAGCCAGGAGAGCTTCAGCTGTGGCCTGGCTTGCAATAAGCCGCTGAACTGCGGTCGCCACAAATGCATCAAGCCGTGCCACGAGGGCCCTTGCCAAGCAGCCGGCGAGATCTGCAAGCAGAGTTGTACCACCGTGCGAGCAGCCTGCGGACACAAGTGCATGGCGGCTTGTCATGACGGAGACTGCCCTGAGACTGCATGCAAGGAGATCGTGGATGTGACTTGTGAGTGCGGCAATCGAAAGCAGACAAGAGCATGCTACGATTTCGCACGCGAATACCGTCGTATTGCTACGGCACAGTTGGCCTCCTCAATGGCAGAGGTTTCGCGCGGAAACACTGTCGAGCTGAGTGACATCCTGGGAACTGTCAAGATTAACAACAATAAGGCGATTGAATGCAACGATGAATGCCGCACGCTCGAGCGAAATCGTCGGCTTGCCATTGGCCTGCAAATACGTAATCCCGATCTGCCGCAGAAGCTACTTACCAAATATTCCGATTTTATACGCGGCTATGCGAAGAAGGACCCTAATCTGGTGAAAACCATTCACGACTCTCTGACCAACCTTGTCAAACTGGCCAAGGAGAGCAGACAGAAGTCCCGAAGTCACTCGTTTCCCATAATGAACCGCGAGAAACGTCAGCTGGTTCACGAGATGTGCGAAATGTTTGGCGTCGAGTCCGTCGCCTACGATGCCGAGCCCAATCGGAATGTTGTCGCAACTGCTTACAAGGAGAAGTCCTGGCTGCCAGCGCAAAGTATCATGGATGTCGTACAGCGTGAGAGTGGACAACGACGTGTCCCAGTGCCAAGCAACAATGCTTGGGGCATCAAGAGGTAA
- Protein Sequence
- MSDTFYRYHDAAGGSGSNSSAATNNNNYVNFNQFMMQHNIIGGGSGDASPATSTNPFHYNGGSQYDQQYSVDEFYLNGSSRTGGTSRYNHQPSYSYSNSTLHATAAEFVPRFSSLSLDETAVSKPNDVAVTPIQTAADVQNANANSNGVNGPSSSKSSSNHFESSLNKSPPQRYTGATGKNRDSTSRGSSAVNANSSRRQNGRDYHRNQRYDNNRSNKRRDDWNRNRDRVNAFREEKYTIENGNDSPLNSPEKKSPKKPQPENEKLSQREKLIREIEARRLECLVCVEPIKSHNPVWSCHNCYHILHLNCIIKWASSSKSEDGWRCPACQNVEKDVPRDYFCFCGTVKNPQLNRNDIAHSCGEVCGRIEGCSHACTLLCHPGPCPPCQANVTRECGCGKTTKTMQCYLKESIECDAKCQKLLNCELHSCEDSCHEGKCKPCDQKVDQKCHCGKHDRQVACTRDSHEKKNYSCGKPCGKDLSCGNHKCKDCCHAGECRPCKFSPEIVTSCPCGKMPVALEQRKSCLDPIPVCDGICSKTLRCGKAAHPHHCTSKCHLNNCPPCNKQTAVKCRCGHMDQMIKCRQLSTRADDARCKKRCVKKRSCGKHKCSQECCIDIDHICPMPCNYTLSCGKHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIYPPVPCGTKKPPCKRPCSRQHPCDHPVQHNCHSAANCPPCMMFTTKWCFGQHEQRKTIPCSQESFSCGLACNKPLNCGRHKCIKPCHEGPCQAAGEICKQSCTTVRAACGHKCMAACHDGDCPETACKEIVDVTCECGNRKQTRACYDFAREYRRIATAQLASSMAEVSRGNTVELSDILGTVKINNNKAIECNDECRTLERNRRLAIGLQIRNPDLPQKLLTKYSDFIRGYAKKDPNLVKTIHDSLTNLVKLAKESRQKSRSHSFPIMNREKRQLVHEMCEMFGVESVAYDAEPNRNVVATAYKEKSWLPAQSIMDVVQRESGQRRVPVPSNNAWGIKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01542617;
- 90% Identity
- iTF_00312266;
- 80% Identity
- -