Cver023341.1
Basic Information
- Insect
- Cheilosia vernalis
- Gene Symbol
- -
- Assembly
- GCA_949126925.1
- Location
- OX421361.1:56906421-56910194[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.1e-13 1.9e-09 38.4 16.8 1 68 41 111 41 113 0.88 2 3 0.00023 0.53 11.3 0.7 2 22 157 177 156 182 0.88 3 3 5.3e-05 0.12 13.3 0.8 56 70 184 198 179 198 0.92
Sequence Information
- Coding Sequence
- ATGTCACAGTCACAGCCAGCAGTAGTTAACAACGATCCAGCGGTTAGCAAGAAGATCGCCGATCAAACGATATTCGACAATTATGCGACACCTTTGGTGGGGCAATTCCTAAACCTGCCCAGAGAGCCGGTTGACATAACCTGCCCGGCATGTCAGATACATGCCAAATCCGAGGTGACGCATGACCTCAAATGGTACACCAGCACGATCAACGGCTTCTATTCGTGCctatttgtAATGTTTTGCTGCTGCTTCTGTCGGAGTTTCTCGCATCCATGCAAACACACAGATATGAACCATTACTGCAAGAACTGCGGCTGCTACTTTGGTCGCGTAATGAAGCCGAAAAAGTATCTAAAGAAAACCAAAGCGAACAGCGACATGGTTGAGGTACAGACAACACAAATCGTAGATGAGCCGATCCCGGGACCAGTTGCCCCAAAAGTGTTCTACTTTGCCGTCGGTCCGAGTTCACATGAGGTCACCTGTCCATTTTGTCAAGTGGAAGGTAAAACCACTCTCAGGCGGAAATGGCTGAAGTGTTACCGCCAGCACTATTGTTCCAGCTGTGGCGAGTATCTGGGAACTTATCGACGACCACAACTCTAG
- Protein Sequence
- MSQSQPAVVNNDPAVSKKIADQTIFDNYATPLVGQFLNLPREPVDITCPACQIHAKSEVTHDLKWYTSTINGFYSCLFVMFCCCFCRSFSHPCKHTDMNHYCKNCGCYFGRVMKPKKYLKKTKANSDMVEVQTTQIVDEPIPGPVAPKVFYFAVGPSSHEVTCPFCQVEGKTTLRRKWLKCYRQHYCSSCGEYLGTYRRPQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00314817;
- 90% Identity
- iTF_00314817;
- 80% Identity
- -