Basic Information

Insect: Cheilosia vernalis
Gene Symbol: su(Hw)
Assembly: GCA_949126925.1
Location: OX421358.1:113616768-113621966[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.018 2.3 9.6 1.3 1 20 120 139 120 141 0.93

2 13 3e-06 0.00038 21.5 0.4 3 23 192 213 190 213 0.92

3 13 0.031 3.9 8.9 0.0 1 23 219 241 219 241 0.97

4 13 8e-05 0.01 17.1 5.7 1 21 248 268 248 269 0.94

5 13 2.8e-05 0.0035 18.5 1.1 3 23 282 302 282 302 0.98

6 13 0.00017 0.022 16.0 6.2 1 23 313 335 313 335 0.99

7 13 7.1e-06 0.0009 20.4 0.6 1 23 341 363 341 363 0.97

8 13 2.7e-06 0.00034 21.7 0.3 1 23 369 391 369 391 0.99

9 13 8.1e-06 0.001 20.2 5.0 1 23 397 419 397 419 0.98

10 13 8.3e-06 0.001 20.2 2.5 1 23 423 445 423 445 0.98

11 13 0.00073 0.092 14.0 1.6 2 23 456 479 454 479 0.87

12 13 0.078 9.8 7.7 1.4 3 23 487 508 486 508 0.96

13 13 0.00032 0.04 15.2 4.8 1 23 513 536 513 536 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.018	2.3	9.6	1.3	1	20	120	139	120	141	0.93
2	13	3e-06	0.00038	21.5	0.4	3	23	192	213	190	213	0.92
3	13	0.031	3.9	8.9	0.0	1	23	219	241	219	241	0.97
4	13	8e-05	0.01	17.1	5.7	1	21	248	268	248	269	0.94
5	13	2.8e-05	0.0035	18.5	1.1	3	23	282	302	282	302	0.98
6	13	0.00017	0.022	16.0	6.2	1	23	313	335	313	335	0.99
7	13	7.1e-06	0.0009	20.4	0.6	1	23	341	363	341	363	0.97
8	13	2.7e-06	0.00034	21.7	0.3	1	23	369	391	369	391	0.99
9	13	8.1e-06	0.001	20.2	5.0	1	23	397	419	397	419	0.98
10	13	8.3e-06	0.001	20.2	2.5	1	23	423	445	423	445	0.98
11	13	0.00073	0.092	14.0	1.6	2	23	456	479	454	479	0.87
12	13	0.078	9.8	7.7	1.4	3	23	487	508	486	508	0.96
13	13	0.00032	0.04	15.2	4.8	1	23	513	536	513	536	0.97

Sequence Information

Coding Sequence: ATGTCTCTGGTTAGAGGGTCATCCAAAAGAGCGCTGACCACAAGGTCGAGCAGAAGTGTGCTACTTTTGAACGCCTCGAAAAAATcaaaacttgcaaaaaaaaaacctgagccAGACTCAGAAATTGAATTTGTCAAAGATGATCCAGAGGCGCCAACTCAACATTACCTGATAACAGAATTCAAAGGCGATGAGGACAACGAGATTGATCTTGTTCTTACACAAAACCGATCTCCAGACGAAAGTGGTCAGCCAGCCGAATGTGTCGAAGAGATCCACTTCAATGAGCTACACAGCGATGAAGGGGGCAATAATAGCGACGGTGAGAACAACATAAACACACGGGAAATTATCGAACACGTCTGTGGCAAGTGTTTCAAATCGTTTCGATTGATCAAGGCATTTAAACGTCACTTGGCCTACTGTATTTTTAACAGCGAAATGGTATTGCGAAGAGCAGAAATGCAAAAGAACATTGAAAAGATCGAAAAGGAGGCCATTGGTATGGAAAAGAAAGATATCTGCTTCTGCTGTGGCGACAACTACGATACCTGTCACTTGGGCCACATAAACTGCACCGAATGCCCAAAAACATTCAAGACACAAATCTCGCTTGAACGCCACATGTTTCTTATTCATTCGGAAAAGAACGATTTCCCTTGTGATGTCTGCAATGGCAGTATTCGAACGGAAGCACTATTGAAATTGCACATTGAGCAACATAAAAACCGTGGCAAGCCGTTTGCTTGCAAAAACTGTGGAAAAGACTTTACACGACTGTATCATTTGAAGCGGCATCACAAACACTCGGCGTGTGGTGAGGGAATACCTGAAACTATGGGTTGTAAGGTGTGTGGCAAGAAATTCTTTCGCATGGACAACTTGCGTGTCCACCTAAAGGCTCATTTGGGTCAGGGTACACCCAAGAAAGCCGAGTATACATGCCCGTGCTGCAAAAAGTGCTTCTATAGTTTGTCAACTCTAAACATTCACATTCGAACTCATACTGGCGAGCGGCCTTTTGATTGTGATATTTGTGACAAGGATTTCCCATCGCTGGTGTCGCTGAAAAAGCACAGGAGATATCACACAGGCGAGAAGCCATACACATGTGAAATTtGCGGCCAAAACTTTGCGGTCAAAGAAGTCCTCAACCGGCACATGAAACGACACACTGGTGAAAAGCCACATGTCTGCTTGCACTGCAACAAACGCTTTATTCAAGCTACCCAATTGAAGAACCACTTGCGTACTCACGAGCGACCATTTGAATGCACCGAGTGCCCTGAGAAATTCAAAACAGAAAAGCAATTTGAGAAGCACTACAAGACGCACAAAGTGAAAAAGCCATGGAAGACGTCTTGCAACTGCGTAGATTGTGACTTGCAGTTTAGCAGTCGAGCCGCCCTAACAAGGCACGAGAAGACCACCACCCACATTGAAAACTTGAAGAAATTTTGTCCTGAATGTGGCATTAAATGCGACGATCTGAAGTCCCTAGAATTCCATATGCTTAAAAAGCACGAAACCACTGAATACAAGTGCGATAAGTGCGATTTAACTTATCGACAACTCCATTTGTTACAACATCACAAGAAAATCGTTCACAATACGAGTCCAGCTAAGCCACCATTCGAAACACCCGTTGGTGCAGTGAAGAATGAAATGAATGACTGCGTTGTACTTCAGGAATTCATCGTTGAGTCGTTCGCAACAGAAGTGAGTGAGATCGACCAAAAGCAATTCACAGTGATTGCCCAAGACAGTGATGTATCGCCTGACTTTAAGGAAAGCAAAcaagagatcaaaaaaaagtcACCAACACTTCGAGCTGAACTAAAAGAGTCACTGGTGAATTGTTTGCGCGAAGATCCAGCTAAAAAAGTAGTTAAGAATGTCATGAGCGCGGAGGATGTGGAAATAAGCGAGAATGTTGGTAAATTGCTTGATATGCTAGTAGACGTAGAGACGCTTGGAAAGTTTGGCTGGCCACAAGATCCTGTTGAGAATGTTCTTTGTAAGGTAATTGAGAACTGTGGCTACAATCTGTACAAGACGAAATTCACCGAAGAGTACGGCACAAGGATGAGGGAATATGTCAAACTTATGTTTACCGTGGTCATACAAAATGATTCAATCAAGGAGCTCTTGAATAATTACCCAATCGATGAAGTTATTGCGTTTGTGCTTTCAAATGAAGACGACgagttgaaattgtaa
Protein Sequence: MSLVRGSSKRALTTRSSRSVLLLNASKKSKLAKKKPEPDSEIEFVKDDPEAPTQHYLITEFKGDEDNEIDLVLTQNRSPDESGQPAECVEEIHFNELHSDEGGNNSDGENNINTREIIEHVCGKCFKSFRLIKAFKRHLAYCIFNSEMVLRRAEMQKNIEKIEKEAIGMEKKDICFCCGDNYDTCHLGHINCTECPKTFKTQISLERHMFLIHSEKNDFPCDVCNGSIRTEALLKLHIEQHKNRGKPFACKNCGKDFTRLYHLKRHHKHSACGEGIPETMGCKVCGKKFFRMDNLRVHLKAHLGQGTPKKAEYTCPCCKKCFYSLSTLNIHIRTHTGERPFDCDICDKDFPSLVSLKKHRRYHTGEKPYTCEICGQNFAVKEVLNRHMKRHTGEKPHVCLHCNKRFIQATQLKNHLRTHERPFECTECPEKFKTEKQFEKHYKTHKVKKPWKTSCNCVDCDLQFSSRAALTRHEKTTTHIENLKKFCPECGIKCDDLKSLEFHMLKKHETTEYKCDKCDLTYRQLHLLQHHKKIVHNTSPAKPPFETPVGAVKNEMNDCVVLQEFIVESFATEVSEIDQKQFTVIAQDSDVSPDFKESKQEIKKKSPTLRAELKESLVNCLREDPAKKVVKNVMSAEDVEISENVGKLLDMLVDVETLGKFGWPQDPVENVLCKVIENCGYNLYKTKFTEEYGTRMREYVKLMFTVVIQNDSIKELLNNYPIDEVIAFVLSNEDDELKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00312856;
90% Identity: iTF_00315376;
80% Identity: -