Cver020570.1
Basic Information
- Insect
- Cheilosia vernalis
- Gene Symbol
- sip1
- Assembly
- GCA_949126925.1
- Location
- OX421361.1:15187159-15187935[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.6e-11 7.1e-07 29.9 3.2 237 275 5 44 1 44 0.91 2 2 0.034 3.7e+02 1.3 0.1 157 190 56 88 47 100 0.66
Sequence Information
- Coding Sequence
- ATGTTTAAAGTTCACCAATCCTCTTCAATTGAATTGTGGAATCAAGTTTGGGAATGGAATGAACTGATACCTGCTCTGCTGATGGGACAAATTCTCGACAAGTGCTTCTTCCCCAAATGGATGCAAGTTCTTGTTCTCTGGCTAAATCAATCGCCAGACTTTGATCAAATCTCTCGATGGTATACCGGATGGAAGACAGTACTCGGCGAGGAATTGATAAAGCAGCCAATGATCAAGGAGCATCTCCGGCGAGCACTCGAAATGATGCACCGAGCAACTGAAACAGTATCAACATCTCAGTCCATACCCACTCCAGTTGCACCACCACAGCCACAGCCGGCAGGGTCCAGTAGTTCTTCAGCATGTCCACCGGCGCTGATGGATCTTCAAATAGCTCCACCTACACAGTTGGAATTCAAGGAACTCGTATCGCAAAAGTGCGCTGAGCGTGGGGTAATATTCGCACCCATGCCAGGCCGTAGAGAATTTGGCAAACAGGTCTATCGAGTTGGAAAGCTATTTTGCTACATCGACCGTAATGTGGTCATGCTGAGTGATGGCAGCTTGAAGAGTTGGACGCCAACTTCACTGGGGCTGACAATAGAACGAGCTCTATCTGGCTAA
- Protein Sequence
- MFKVHQSSSIELWNQVWEWNELIPALLMGQILDKCFFPKWMQVLVLWLNQSPDFDQISRWYTGWKTVLGEELIKQPMIKEHLRRALEMMHRATETVSTSQSIPTPVAPPQPQPAGSSSSSACPPALMDLQIAPPTQLEFKELVSQKCAERGVIFAPMPGRREFGKQVYRVGKLFCYIDRNVVMLSDGSLKSWTPTSLGLTIERALSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -