Cver001923.1
Basic Information
- Insect
- Cheilosia vernalis
- Gene Symbol
- rfx7.L
- Assembly
- GCA_949126925.1
- Location
- OX421358.1:25859934-25867117[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.1e-32 4.3e-28 98.5 0.0 3 78 259 334 257 335 0.97 2 3 0.32 3.4e+03 -0.5 0.2 22 44 657 679 648 680 0.89 3 3 3 3.2e+04 -3.6 0.0 24 41 1149 1166 1141 1170 0.82
Sequence Information
- Coding Sequence
- ATGTCCGACAAAAATGTACACCAATTGCAGTGGAAACAAAAGAATTCAGATCAATCGATATACGCCTCACGAAATGCGAAcattcaatcaacatcaccgaTCGCTAATCAGCAGTCTACAGCAGCTGCTGCCTCAGCTTCAATTCACCCGTCACATTCGGGGACGGCTTCGAATGGCCGTTACCCGATAATTGGTAGCCAGCAGCAGGTCGTCACCTCTCCATCGTCATCAACATCATCAACAAATACTTCAATTGGTCTTCAACAACATTTTCATACTATGCAACAccttcagcagcagcagcaacaacaacaacaacaacaacaccatcatcaacagcagcagcaacaacagcataaTCATCCTCATCAACAGAATCCGCATTTTGAATTATCAAAGATTATGGCTATGAACTCGGGTACATTGTCCAGATTAGAGTTGCCTCCAACTTTGGGTAATCACCCTGTTTCCAGTGCGATAACCGAGAATGTCTTAAGTCTGATTGGCAGCATGTCTAGCAGCGGGAACAGTTCCAATACGAAcagcgatgacaacaaaattccaGATGAAGAAAAGCTACGAAGAGTTCAAGCCATTGTTGAGTCTGGCATTGGTGACCATGCCAAACAACAGATTCTGCAAATCCTCGATCGAATTTCTACACTCAAGCCTGTTGAGCGATTACTTTTGTACCTTCGGATGCCGGGAGAAACACCAGAATCAGATCCCCTTCGGCAGCCACAAAACCCACTTGGAACTAGATCCGAAATAAATCACACAATCAATTGGGTGCGTTCACACTTGGAACACGATCCAAAGGTTTCCATTCCAAAGCAAGATGTTTACAACGATTATATaGCATACTGTGAACGTTTGGATATAAAACCTCTGTCGACAGCTGACTTCGGCAAAGTGATGAAGCAAGTGTTTCCCGAAATTCGTCCCAGACGTTTAGGCACACGTGGCCACTCTCGTTATTGTTATGCAGCGATGAGAAAAACCACAAAGCTAATTCCACCACAGCTTCCCACGATTGGTGGGAGAACTGTAGACACAGTGAGTAGCTGTGAAATTGAAAGCGATCCGGATGCAGACTCATGGAGCACAGTTCGCACCTGGGCCGAGGGACTGCTAAACACGAAATTCGATAGCTTAAAGGATTTAGCCGAGCACATTGGAAAGAATGAGTACCTAGGAGGTGGAGCGGGGAGCTCGCGCATCTTACTCCAAAAGAAACTACTACAAAGGGACGCAAAAGAGAAGAGAGTTTATGCGGACTCGGGACCGCTGAAGAAACGGCGAAAGAAAAAACGCAAAGGTTCGACATCCTCCGAATCGAGCAGCACAACGCAACAAGCCTCACTAAACGAACCAACGCGGTCCAATGAAGATATTCTCCTTGGCGTACAAACAATCAAACAAGAAATTCTAGATTCACCAAATTCACAGCAGTCCATACTACCGCAAATGCATTTGCACCAACCAGCCGGCCCCTATGATAGCCAGATGCATGGCCATCAACTGCTTCCAATGAATTTAGCCACTGAGAACGAGCGTACCAAGAGCTTGGGTGGCCTCCTACCAATAAACAGTCCAGTGGCGAAAAATCTTTCAAAAACTATCGCAGACCTACCACCATCGGTGAGCCTGTTGCCAATCGATGCACAGACAGCACAACTAGCCTCCGTCAAAGAGGAGATAATCAACGATGAATACAATCCACAGAATGTGATATGCAAGAAGGTACGGAGGGCACACCTGACGAAAGGTATTCTGCCCACAAACAACCCTCCTTCTTCAACAATCACCGCTGTTGAAGCGATGCCTGCAGCGCCACACGTCGAACTATCACCAGCCGACGTGAGTAACTACCCTATGGGACCACCAGCACAGATCACAACGACTGCAATGGAAAGCGCGAAGCTAGCCTCACAGGTGCGCGCGAGAAAACTGCGATTACTGCAGGCTCACAACGATATGTATCAGACATACGACgcgcaacagcaacagcagcagcaggctCACATACAACAGGCGCCACCCCTGATGGATAATGTTGAAATAACAGAGGACAAAGATGTGGTGCTTCCAGAAAATCTTGGCCTACCGCGTGAGCGTGTAATTAGTATTTGCAACATGGACAAACACGAGCTAGATGACTATTTGAATGCAAACGACGAAGACAACTCCCAGGATCAAGAAGCGGAATTGATTCAATATTTTCAGACGGGAGACGCTGAGAACAAcattaataacaacaacaaggcAACGCTGCAGCAGCAACAACTCCAgcaacatcagcagcagcaacaaaccATAGATGCGCATAACCCAACGTTGGCAGAGTACAACCCCAATTCGGCATTTCAAGTTAACAGCAATAACAACAGCAACAAGAAAAAATCAATGATTGGTACAGCTGGCGGCTGCTACACAAGAGATCGTGATGACATCACACAGCTTCGTAATTATCTTCATCAGAATTTTAATAAGGATTCGAATGAGTCAATGGGAGCACTAGCCGCAGCCACAGCTACACTCAATCAGCGAACAAATGTCCAAGGACAGAAACTTCAGCCGAATGGAAACCACTACATCATGCCTGGCGTATACAACGAAGGGTCAGCCTCAGCGTCTCTAGCAATCATGTCTCAAAAGCATCTAAACGAAACAACATCACCATCGATAGCGATACCCGCCGCTGCGGCATCATCACTATCAATAACATCAACAACGACTACAGCTTCTGTTAGCAACGCCAGCCTAAGAGTAAATCATTCGATCCTGCCCGTCGATGATTATACGCCCGTTCCAAACAATATGCGCGCAACGCAGAAGCGAAAAATCAATCTAAACGCAATGGTACCTGCCCCAAGTACAACGCAACGGCGAAAGAACTGtactttttttccaatttcgccAAACATAAATAATCTTACCAATACTACAacaaacaacagcaacagctcgTCTGTGTCCTGCACATCCTCTATGTCAGCGACGACGAACGCCAATCTATTTGCTAGTCCCAGATTAACAGCCTCTTTGGTGCGTAGCAAGCCAACGCTCCATAAACAGCAATCGCTGCCAGCGGCCGATAAGTCCGCCATTTCGTCCGTAAACGATCCAATGATAGGGGCCAATCGCAACAACAGAAATTACAGCACCATCACATCAGCATCAGCGCCGCCTAGTCCTTCGATATTGCAAGACACTATGATGTTTGGCAAAACGTACAATACCGCCAATCCTATGAGTGGATATAATCCGCTTCTGTCCAATCAAGACTACCAGCAGGCCTTTGCCAACACAAACAAAATGCTAACAAACGATCAGAACTCGTTGGAGTCTGTGCTCGATGAGCCACCGCCACATTTGATGGCTGAATCGCGTTCGCGCTCTGTGCCACTACAATACTGCAACAGTCCTGCCTTCAATCAAACTGCGAACTATGCTGGCTTCTCGTCGACGTGTAACTCGGCCGCGCAGACGCCAGTGCCGCCACAATTTGCTGACTTTAGCGATCCCTCATCGATTTTGGACATCTTCAGCGATGCGAGTCAAACGCACGCATCCGCAATCAAAATGGATGATTCCGCCGGTGGTCTATTATGCGGCTCTGTTGCCGACATCCTCCCTGCGGAGTATGGTCGCATTCCGGCGAATAGTTTTGGCACAATAGCGTCACGTTCAGTGCCATCTACGCCATTGCCGCTGCATAACATGATCGATCCGTTCTTaggcaacagcagcagcaagaaGCATCACCCGAAACAGGATAACTTTCCCAGTGCACAGAGcaaatattcaacaaaaatgtACGACATTTCCAAGTCGATGCCTACGACGCCGATAACATCCAACACGGCTACACCATCGTTCCGTTACAGTCCGGAATTCAATCGAGACTTTCTCATCAACGGCAACACCGTAGAGAGCACACCAGCGTATAGTCGAGCGCCATCTGTTGCCGGAGCTACAGCCCCCAGTCTATCCGATTCACTGCTTGACGACGCCCCCGACGGCGGCTCCAATTCCCTCACCGACGGCATGGATGATTTGGCCAGTTTCGGCGAAGTTTCCGAGTCCATTATCGAAGCGGACATCTTGAACATGAACAATCTTTGA
- Protein Sequence
- MSDKNVHQLQWKQKNSDQSIYASRNANIQSTSPIANQQSTAAAASASIHPSHSGTASNGRYPIIGSQQQVVTSPSSSTSSTNTSIGLQQHFHTMQHLQQQQQQQQQQQHHHQQQQQQQHNHPHQQNPHFELSKIMAMNSGTLSRLELPPTLGNHPVSSAITENVLSLIGSMSSSGNSSNTNSDDNKIPDEEKLRRVQAIVESGIGDHAKQQILQILDRISTLKPVERLLLYLRMPGETPESDPLRQPQNPLGTRSEINHTINWVRSHLEHDPKVSIPKQDVYNDYIAYCERLDIKPLSTADFGKVMKQVFPEIRPRRLGTRGHSRYCYAAMRKTTKLIPPQLPTIGGRTVDTVSSCEIESDPDADSWSTVRTWAEGLLNTKFDSLKDLAEHIGKNEYLGGGAGSSRILLQKKLLQRDAKEKRVYADSGPLKKRRKKKRKGSTSSESSSTTQQASLNEPTRSNEDILLGVQTIKQEILDSPNSQQSILPQMHLHQPAGPYDSQMHGHQLLPMNLATENERTKSLGGLLPINSPVAKNLSKTIADLPPSVSLLPIDAQTAQLASVKEEIINDEYNPQNVICKKVRRAHLTKGILPTNNPPSSTITAVEAMPAAPHVELSPADVSNYPMGPPAQITTTAMESAKLASQVRARKLRLLQAHNDMYQTYDAQQQQQQQAHIQQAPPLMDNVEITEDKDVVLPENLGLPRERVISICNMDKHELDDYLNANDEDNSQDQEAELIQYFQTGDAENNINNNNKATLQQQQLQQHQQQQQTIDAHNPTLAEYNPNSAFQVNSNNNSNKKKSMIGTAGGCYTRDRDDITQLRNYLHQNFNKDSNESMGALAAATATLNQRTNVQGQKLQPNGNHYIMPGVYNEGSASASLAIMSQKHLNETTSPSIAIPAAAASSLSITSTTTTASVSNASLRVNHSILPVDDYTPVPNNMRATQKRKINLNAMVPAPSTTQRRKNCTFFPISPNINNLTNTTTNNSNSSSVSCTSSMSATTNANLFASPRLTASLVRSKPTLHKQQSLPAADKSAISSVNDPMIGANRNNRNYSTITSASAPPSPSILQDTMMFGKTYNTANPMSGYNPLLSNQDYQQAFANTNKMLTNDQNSLESVLDEPPPHLMAESRSRSVPLQYCNSPAFNQTANYAGFSSTCNSAAQTPVPPQFADFSDPSSILDIFSDASQTHASAIKMDDSAGGLLCGSVADILPAEYGRIPANSFGTIASRSVPSTPLPLHNMIDPFLGNSSSKKHHPKQDNFPSAQSKYSTKMYDISKSMPTTPITSNTATPSFRYSPEFNRDFLINGNTVESTPAYSRAPSVAGATAPSLSDSLLDDAPDGGSNSLTDGMDDLASFGEVSESIIEADILNMNNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00724509;
- 90% Identity
- iTF_00310751;
- 80% Identity
- -