Cvar025555.1
Basic Information
- Insect
- Cheilosia variabilis
- Gene Symbol
- stc
- Assembly
- GCA_951230905.1
- Location
- OX579679.1:57521966-57525205[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.9 3e+04 -4.0 1.6 15 19 327 331 326 331 0.81 2 13 0.054 8.8e+02 0.9 0.2 4 10 360 366 359 367 0.95 3 13 5.5e-07 0.0089 16.9 15.1 1 19 372 389 372 389 0.93 4 13 2.6e-06 0.042 14.7 12.5 3 18 427 442 425 443 0.91 5 13 0.76 1.2e+04 -2.8 1.4 8 13 448 453 447 454 0.79 6 13 1.2e-07 0.0019 19.0 18.6 1 19 483 501 483 501 0.98 7 13 0.01 1.7e+02 3.2 15.6 4 18 549 563 542 564 0.86 8 13 0.036 5.9e+02 1.5 11.8 1 11 604 614 604 626 0.91 9 13 4.4e-10 7.2e-06 26.7 15.5 1 18 631 648 631 649 0.97 10 13 1 1.6e+04 -3.2 1.3 6 10 678 682 676 684 0.65 11 13 2 3.2e+04 -6.0 10.2 10 18 696 705 685 706 0.78 12 13 3.5e-08 0.00057 20.7 14.6 1 16 742 757 742 767 0.88 13 13 5.7e-07 0.0092 16.8 10.7 1 18 774 792 774 793 0.89
Sequence Information
- Coding Sequence
- ATGTCCGACACGTTTTATCGGTACCACGATGCAGCTGGTGGCAGTGGTAGCAGCAGTGctacaaccaacaacaacaattatGTAAATTTCAACCAGTTCATGATGCAGCACAACATCATTGGCGGTGGATCGGGTGGCGTTGATGCGTCGCCAGCAACCTCAACAAATCCATTTCATTACAACGGTGGATCACAATACGATCAACAATATTCAGCCGATGAAATCTACTTCAATGGAAGTTCACGTAGTGGCGGAACGTCGAGGTATAACCATCAGCCAAGCTATAGTTACTCCAATTCGACACTTCATGCGACCGCGGCTGAGTTTGTTCCCAGATTCTCCAGCTTGTCGCTGGACGAGACTGCTGTGAGTAAACCAAATGACGTGGCAGCCACACAAATACAAACCGCAGCCGACGTTCAGAATGCAAATGCCAACAGCAATGGAGTTAGTGGTCCATCGAGCAGTAAATCGGGCCCAAATCACTTTGAATCCTCTCTCAATACATCTCCTCCACAACGTTACACCGGTGCCACGGGTAAGAGTCGCGACTCCACCTCAAGGGGTAGTTCGGCTGTGAACGCCAATTCCTCTCGAAGACAGAATGGCCGTGACTTTCATCGAAATCAACGGTACGACAACAATCGCAGCAACAAGCGCAGGGATGACTGGAATAGAAACCGCGATCGTGTGAATGCGTTCAGGGAGGAGAAATACACAATCGAGAATGGCAACGACAGTCCGCTTAACTCGCCCGAAAAGAAATCGCCCAAGAAGCCACAACCTGAGAACGAGAAACTGTCACAGAGGGAAAAACTCATCCGAGAGATCGAGGCACGTCGCTTAGAGTGTCTTGTCTGCGTGGAGCCAATCAAGAGTCACAACCCGGTCTGGTCCTGTCACAACTGTTACCACATTCTGCATCTTAACTGCATCATCAAGTGGGCATCAAGCTCCAAATCTGAGGACGGCTGGCGCTGTCCCGCATGTCAAAACGTTGAAAAGGACGTGCCACGAGACTACTTCTGCTTCTGTGGGACTGTAAAGAATCCACAACTGAATCGCAACGACATCGCACACAGTTGCGGAGAGGTTTGCGGTCGCATCGAGGGATGCTCGCATGCCTGCACCCTCCTATGCCATCCGGGACCCTGTCCCCCGTGTCAAGCGAACGTAACACGAGAATGCGGCTGTGGTAAGACCACCAAAACCATGCAGTGCTATCTGAAGGAGTCTATCGAGTGTGACGCCAAATGCCAGAAGCTGCTCAACTGCGAGCTGCACTCGTGTGAAGATAGCTGTCACGAGGGCAAGTGCAAGCCCTGTGAGCAGAAGGTTGATCAGAAGTGCCACTGCGGCAAGCAGGATCGTCAGGTTGCATGCACAAGAGACTCGCACGAAAAGAAGAACTATTCTTGTGGCAAGCCTTGCGGCAAAGACTTGAGCTGCGGAAATCACAAGTGTAAAGACTGCTGTCACGCTGGAGAATGCCGACCGTGCAAATTCAGTCCGGAGATAGTCACTTCATGCCCGTGCGGAAAGATGCCGGTGGCACTCGAACAGAGAAAGTCGTGCCTGGACCCGATTCCCGTCTGCGACGGCATCTGCAACAAGACACTCCGATGTGGCAAGGCCGCCCATCCTCATCACTGCACAAGCAAGTGCCACTTGAACAACTGTCCGCCCTGCAACAAGCAAACGGCCGTCAAGTGTAGGTGTGGACACATGGATCAGATGATAAAATGCCGACAATTGTCGACTAGAGCTGACGATGCTCGCTGCAAGAAACGCTGTGTAAAAAAGCGCTCGTGTGGCAAGCACAAGTGCAGCCAGGAGTGCTGCATCGACATTGACCACATCTGCCCGATGCCCTGCAACTACACTCTCTCGTGCGGCAAGCACAAGTGCGACCAACCCTGTCACCGGGGCAATTGTCCTCCATGCTATCGCAGCTCCTTTGAGGAGCTGTACTGCGAATGTGGCGCTGAGGTAATCTACCCACCGGTACCATGTGGCACAAAGAAACCACCGTGCAAGCGGCCGTGTTCTCGCCAACATCCGTGCGACCATCCAGTTCAGCACAACTGCCATTCGGCAGCCAACTGTCCACCGTGCATGATGTTCACCACCAAATGGTGCTTTGGACAGCATGAGCAGCGTAAAACCATTCCATGCAGCCAGGAGAGCTTCAGCTGTGGCCTGGCTTGCAACAAGCCGCTGAACTGCGGCCGCCACAAATGCATCAAGCCGTGCCACGAGGGCCCTTGCCAAGCAGCCGGCGAGGTCTGCAAGCAGAGTTGTACCACCGTGCGAGCAGCCTGCGGACACAAGTGCATGGCGGCTTGCCATGACGGAGACTGTCCTGAGACTGCGTGCAAGGAGATCGTGGATGTGACTTGTGAATGCGGCAACCGAAAGCAGACACGAGCATGCTACGATTTCGCTCGTGAATACCGTCGTATTGCCACGGCACAGTTGGCCTCCTCAATGGCAGAGGTTTCACGCGGAAACACTGTCGAACTGAGCGACATCCTGGGAACAGTCAAGATCAACAACAATAAGGCGATTGAATGCAACGATGAATGCCGTACGCTCGAGCGCAATCGTCGGCTTGCCATTGGCCTGCAAATCCGTAATCCCGATCTGCCGCAGAAGCTACTTACCAAATATTCCGATTTTATACGCGGCTATGCGAAGAAGGACCCAATTCTGGTGAGATCCATTCACGACTCTCTGACCAACCTCGTCAAACTGGCCAAGGAGAGCAGACAAAAGTCCCGAAGTCACTCGTTTCCCATAATGAACCGCGAGAAACGTCAGTTGGTTCACGAGATGTGCGAAATGTTTGGCGTTGAGTCCGTCGCCTACGATGCCGAGCCCAATCGGAATGTTGTCGCAACAGCTTACAAGGAGAAGTCCTGGTTGCCAGCACAAAGTATCATGGATGTCGTACAGCGTGAGAGTGGCCAACGACGCGTCCCAGTGCCAAGCAACAATGCTTGGGGCATCAAGCGTTAA
- Protein Sequence
- MSDTFYRYHDAAGGSGSSSATTNNNNYVNFNQFMMQHNIIGGGSGGVDASPATSTNPFHYNGGSQYDQQYSADEIYFNGSSRSGGTSRYNHQPSYSYSNSTLHATAAEFVPRFSSLSLDETAVSKPNDVAATQIQTAADVQNANANSNGVSGPSSSKSGPNHFESSLNTSPPQRYTGATGKSRDSTSRGSSAVNANSSRRQNGRDFHRNQRYDNNRSNKRRDDWNRNRDRVNAFREEKYTIENGNDSPLNSPEKKSPKKPQPENEKLSQREKLIREIEARRLECLVCVEPIKSHNPVWSCHNCYHILHLNCIIKWASSSKSEDGWRCPACQNVEKDVPRDYFCFCGTVKNPQLNRNDIAHSCGEVCGRIEGCSHACTLLCHPGPCPPCQANVTRECGCGKTTKTMQCYLKESIECDAKCQKLLNCELHSCEDSCHEGKCKPCEQKVDQKCHCGKQDRQVACTRDSHEKKNYSCGKPCGKDLSCGNHKCKDCCHAGECRPCKFSPEIVTSCPCGKMPVALEQRKSCLDPIPVCDGICNKTLRCGKAAHPHHCTSKCHLNNCPPCNKQTAVKCRCGHMDQMIKCRQLSTRADDARCKKRCVKKRSCGKHKCSQECCIDIDHICPMPCNYTLSCGKHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIYPPVPCGTKKPPCKRPCSRQHPCDHPVQHNCHSAANCPPCMMFTTKWCFGQHEQRKTIPCSQESFSCGLACNKPLNCGRHKCIKPCHEGPCQAAGEVCKQSCTTVRAACGHKCMAACHDGDCPETACKEIVDVTCECGNRKQTRACYDFAREYRRIATAQLASSMAEVSRGNTVELSDILGTVKINNNKAIECNDECRTLERNRRLAIGLQIRNPDLPQKLLTKYSDFIRGYAKKDPILVRSIHDSLTNLVKLAKESRQKSRSHSFPIMNREKRQLVHEMCEMFGVESVAYDAEPNRNVVATAYKEKSWLPAQSIMDVVQRESGQRRVPVPSNNAWGIKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01542617;
- 90% Identity
- iTF_00312266;
- 80% Identity
- -