Cvar026081.1
Basic Information
- Insect
- Cheilosia variabilis
- Gene Symbol
- -
- Assembly
- GCA_951230905.1
- Location
- OX579680.1:3682467-3683951[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0014 9.3 7.3 0.1 22 45 173 196 168 200 0.85 2 4 0.0034 22 6.1 0.0 21 44 200 223 197 228 0.89 3 4 0.0025 16 6.5 0.1 27 47 290 310 284 315 0.84 4 4 0.0045 29 5.7 0.0 21 45 312 336 309 342 0.90
Sequence Information
- Coding Sequence
- ATGCCACCGAATGGCGTGGAACCACCCATGTACCAATACCCCGTCAATGGTTACGATACCCAACAGCAACTATTTtatcagcagcagcaaccgAACACCGACGAAAACCTATACCATAGTGCCTTTGACCAAAATAATTGCACTTACGAAGAGGTAGACCCAAATCAAAAGTATGAATACCATGAACCTGATGAGAATTTCATATCCATTGATGATGCAAAAGTCCGGTCCTTTCTGCTGGATTTGCTGCAGAAGgagaaggaaaaaaataaagcagaCGAGGAAATGGAGGCGAAAAGGAAATCGGAACTCAAGACTAAAGAAGAGATATCTGTAAATCCAATTGAAAATATTGGCGATGAGCAGTTGATGAATGAGAGTGATGAGAGTACAATGCATGATATCGAATACGATGAGGACGGAGAAATTGTTCTCTTGGATTCGGATGTGGATTATGTGGATGAGAACGAAGAAGGTATTGAGCTTAATTGGATTGACTTGGAACAGAAGGCGCAAAAGCAAACAATCGAGTGTTTTCTCTGTGGCAAGAGTGTAGTCTCCAGTTACAACCTTCGAAGGCACATGATGATCCATACAGgcgAACGACCCTTCGGCTGTGACATGTGTTACAAACGCTTTCGCGAATTCAGTGACCTGAAAAAGCATCGCCGTGTGCATTCAACGCAGATGAACTTCAAGTGTATGGTCTGTCGCGTCAATGAACCCTCATCGTATGATCCGACCAAATGTGTTGCTTGCGACAAAAGCACTCCCGGCGATGGAACACAAGAAATGGCGGACCTGCTGCTTGATAGTGTCCCAAATGTTGCCACCCCTACAATTGCCGGCGGTAAAAAGCAATTCCCCTGTCCGATGTGTAATCGTATCTTCGGCACTCGACATAATCTCAAGCGACACTTTATGATACACACGGGAGAAAAGCCGTTTAGTTGCAGCATCTGCCAAAAACCGTTTCGCGAGGTGTCTACACTAAAGAAGCACATGCACACCCACACCAAAGTGAAGGTATACAAGTGCTGCCACTGTAGTGAGAGATTCACCGACTACGATTCATACGTGGAGCACAAGGATACACATCCAAAGAAGAGTACGGCAGTGAAAAGAATGAGAGGCTTAAAAGGTCACGCAATGCCAAGCAAACGACGGCGTAGTGATACCGAATCAGCTGTGGCAGATGACGACGAAGAGTTCGAGTGTCCAGAGTGCGGCGAAAAATCGGCTTCTATCGAACTATATGCCGACCACATCAAGATGCATGACTCGTCCGTTGAGTTTCAGTGCTATATTTGCAAGGAAATGTTCGAGTCCAGAGATTTGTTGGTATCACATTTCACGGTGCACGATGTGGACGATGAATCAAGTGCAGATGGTTAG
- Protein Sequence
- MPPNGVEPPMYQYPVNGYDTQQQLFYQQQQPNTDENLYHSAFDQNNCTYEEVDPNQKYEYHEPDENFISIDDAKVRSFLLDLLQKEKEKNKADEEMEAKRKSELKTKEEISVNPIENIGDEQLMNESDESTMHDIEYDEDGEIVLLDSDVDYVDENEEGIELNWIDLEQKAQKQTIECFLCGKSVVSSYNLRRHMMIHTGERPFGCDMCYKRFREFSDLKKHRRVHSTQMNFKCMVCRVNEPSSYDPTKCVACDKSTPGDGTQEMADLLLDSVPNVATPTIAGGKKQFPCPMCNRIFGTRHNLKRHFMIHTGEKPFSCSICQKPFREVSTLKKHMHTHTKVKVYKCCHCSERFTDYDSYVEHKDTHPKKSTAVKRMRGLKGHAMPSKRRRSDTESAVADDDEEFECPECGEKSASIELYADHIKMHDSSVEFQCYICKEMFESRDLLVSHFTVHDVDDESSADG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01541692;
- 90% Identity
- iTF_00725046;
- 80% Identity
- iTF_00315464;