Cvar013701.1
Basic Information
- Insect
- Cheilosia variabilis
- Gene Symbol
- -
- Assembly
- GCA_951230905.1
- Location
- OX579676.1:132509401-132510885[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 3.8 2.5e+04 -3.7 0.2 26 44 160 179 158 182 0.57 2 8 0.53 3.4e+03 -0.9 0.0 22 45 215 238 210 245 0.78 3 8 0.0029 19 6.3 0.1 21 50 242 270 235 273 0.85 4 8 0.00068 4.4 8.3 0.3 21 48 297 324 276 328 0.84 5 8 0.00041 2.7 9.0 0.1 21 45 325 349 321 356 0.89 6 8 0.0034 22 6.1 0.1 18 47 377 407 367 413 0.81 7 8 0.0024 16 6.6 0.0 23 45 439 461 435 464 0.89 8 8 0.01 65 4.6 0.0 21 45 465 489 462 493 0.89
Sequence Information
- Coding Sequence
- atgGCTGGTGAGATGACACAAATCGAGTTCTCCGATATGGTCAAGGACGGCAACTGCAGTTTTTCCGATTGGCGTGACGAGGATGAAGACGAAGATGATCATATCAACGGGATTCTCCTTACCGAGGATATGATTAAACAAGAACCCGAATTCATAGTCGACTCCAACGACATTAATGAGGAACAGAAGATACGTACATTTCTCAAGAAGGTCAACATTGACGATGAGGAGAGGCAAAAGCTCAACTGGCTAACTTGTATACTGTGTGATGAGCGCTTTTTATCAATCAAAGAACTATCCCTACACGTGCAGGAACACGCCAAAACTGCCCTAAAAGAGGAAGGAGACGAAATCCAGCCTCCAAAGGAGCTAACCAACCGACAGGCGCCGAAAACGCAATATACTGGCTTTAGCAGGCAGGAACTCTTCCAGGATTACATAAACATCAGCGTCGAGTTGGATGGCAAGGCGACATATACCTGTAAACTGTGCCCCAACAAAGTGTTCGCACGGCAAGTGTCTATGCGAAATCACATGCGCATTCACGAGAACCCAACGTATAAGGAACGCTCGTGTCACATCTGCAAAAAGACATTCCTGCGAAGGGACACATTGTTAGTACACTTGCGCGTTCATAACAACGAGCGGAACTATAAGTGCGACGTCTGCGAGGCCTCCTTCTCACATTCCAGTTCGCTGGTGTCGCACAAGCGTATCCACACCGGCGAAAAACCATACGTGTGTTCAATTTGTTCAAAGTCCTTTCGCGAGTCTGGTCAACTGACCGCGCACAAAAAGACCCACTTCGAGAAGCTTTTGCAATGCCCCAAGTGTGAGAAGAAATTCACTTCCAACAAGACGCTTCGTGTACACTGCCGAACCCATACCGATGAGCGCCCCTACACCTGCACCTACTGCGGAAAGATGTTCCGCTGCAGTACTAGCCTGACAACGCACCTGCGTGTGCATACTGGAGAAAAGCCCTTCAAATGCGAAATATGTTCATATGCCACCAAACAGTCGGGATATCTTCGCACTCATATGCGAACGCACACCGGCGAGAGACCGTACAAATGTTTGTACTGCGAAAAGGCCTTCTCGGAGAAGAAGCGCTTAGTTACCCACACTCGCAGCCACACGGGGGAACGGCCGTACCAGTGTATTTACTGCGATGCGGCGTTCGCGCGAAACGATAACCTCAAGTACCATCTGCGAACGCACACCGGTGAAAAGCCGTTCAAGTGCGCTGAATGTGGCAAGCGATTCACTCAGGGTAATGCCCTCACTACGCACCAAAAGATTCACACCGGTGTCAAGCCATACGCTTGCCCACACTGCGACATGAAATTCAGACAAAGCGGGACTTTGGTCACTCACTTGCTAATGCACACGAACGAGCGGCCGTTCAAGTGTGATCTCTGTGAGTCCGGATTCCGGCAGAGGGCTTTGCTGAAGAAGCACATCGCCAGTGTTCACGGCGACTAG
- Protein Sequence
- MAGEMTQIEFSDMVKDGNCSFSDWRDEDEDEDDHINGILLTEDMIKQEPEFIVDSNDINEEQKIRTFLKKVNIDDEERQKLNWLTCILCDERFLSIKELSLHVQEHAKTALKEEGDEIQPPKELTNRQAPKTQYTGFSRQELFQDYINISVELDGKATYTCKLCPNKVFARQVSMRNHMRIHENPTYKERSCHICKKTFLRRDTLLVHLRVHNNERNYKCDVCEASFSHSSSLVSHKRIHTGEKPYVCSICSKSFRESGQLTAHKKTHFEKLLQCPKCEKKFTSNKTLRVHCRTHTDERPYTCTYCGKMFRCSTSLTTHLRVHTGEKPFKCEICSYATKQSGYLRTHMRTHTGERPYKCLYCEKAFSEKKRLVTHTRSHTGERPYQCIYCDAAFARNDNLKYHLRTHTGEKPFKCAECGKRFTQGNALTTHQKIHTGVKPYACPHCDMKFRQSGTLVTHLLMHTNERPFKCDLCESGFRQRALLKKHIASVHGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01395957;
- 90% Identity
- iTF_00311461;
- 80% Identity
- iTF_00315372;