Basic Information

Insect: Cheilosia variabilis
Gene Symbol: -
Assembly: GCA_951230905.1
Location: OX579678.1:23706295-23708862[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0033 0.46 11.9 5.7 1 21 209 229 209 231 0.95

2 11 2e-05 0.0028 18.8 1.0 1 23 237 259 237 259 0.98

3 11 0.0014 0.2 13.0 5.4 1 23 265 288 265 288 0.96

4 11 0.034 4.8 8.6 3.9 1 21 294 314 294 316 0.95

5 11 2.3e-05 0.0033 18.6 2.9 1 23 322 344 322 344 0.99

6 11 7e-05 0.0099 17.1 2.0 1 23 350 372 350 372 0.98

7 11 0.00064 0.09 14.1 3.7 1 23 380 403 380 403 0.97

8 11 0.0018 0.26 12.7 3.5 2 23 410 431 409 431 0.95

9 11 0.002 0.28 12.5 0.5 1 23 437 459 437 459 0.98

10 11 8.9e-05 0.013 16.8 2.4 1 23 465 488 465 488 0.94

11 11 4e-08 5.7e-06 27.3 1.5 1 23 502 524 502 524 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0033	0.46	11.9	5.7	1	21	209	229	209	231	0.95
2	11	2e-05	0.0028	18.8	1.0	1	23	237	259	237	259	0.98
3	11	0.0014	0.2	13.0	5.4	1	23	265	288	265	288	0.96
4	11	0.034	4.8	8.6	3.9	1	21	294	314	294	316	0.95
5	11	2.3e-05	0.0033	18.6	2.9	1	23	322	344	322	344	0.99
6	11	7e-05	0.0099	17.1	2.0	1	23	350	372	350	372	0.98
7	11	0.00064	0.09	14.1	3.7	1	23	380	403	380	403	0.97
8	11	0.0018	0.26	12.7	3.5	2	23	410	431	409	431	0.95
9	11	0.002	0.28	12.5	0.5	1	23	437	459	437	459	0.98
10	11	8.9e-05	0.013	16.8	2.4	1	23	465	488	465	488	0.94
11	11	4e-08	5.7e-06	27.3	1.5	1	23	502	524	502	524	0.97

Sequence Information

Coding Sequence: ATGTCGGACTTGCAAATTAAGCTCGAAAGCAATGAGTTGCAGACGTACTTGGATACTTTTAACAAAGAAATAGAGGAGGGCAATCAGAGTCTCAACACAACCCTTGTAGAGACCATTGATTTAGGAAGTATGCAAAGTAAAGAGGAAGAAGAGGATGATGACGAAGAAAACGGTACGTACTTTGTTGATCAGGCAGGAAACTACTACTATCAACCAACCAAAGATTCGGAGCCAATACCTACCAGTCCTCCCGATCATATTCATCAAATAATCGACGACAGTGATAACGAGGAACTTACAACTGTAACAAAAGAGACATCTGGTAAACGTCGGAGCCCAAAAACATCAATtgtaaaaaaatctaaaattccaaAAAGCGAAGAAGATACCAACTACGTATTAATACTTGGTGATGAAAAAGAAGATGAGACCAACGACGAGAACGGTCAATCTAATGGTAACGAAAACGATAATGACGATGATGGCGATGGCGATAACGTCGATGATACAGAAGTGTATGAGTTCGATGAGAACGAGGAGGTTTCGTCCAAAATATCTAGTTTACTTTTGTCAGCAAAGGTTGTCCGTTTAAAAACCGAAACCAGTTCTGCCAATGTTTCTTCGCATCAGTGTCCTCACTGCGAATATGTGACAAGCAAAAGGTATTTACTGGCCCGCCATATGAAATGCCATTCCGAGGAACGTCCTCATAAATGTGCTGTCTGTGAGCGTGGCTTCAAAACAAACGCATCTCTGCAAAACCATGCGAATACTCATACAGGGAATAAACCACATCGCTGTAGACATTGCACTAGCACTTTTACGACTTCTGGAGAGTTGGTACGTCACGTTCGTTACAAGCATACGCACGAAAAGCCACATAAATGTTTCGAGTGTGATTATGCCAGTGTGGAGTTGAGCAAACTTAAACGACATATTCGATGTCACACAGGGGAGCGCCCATATCAATGCCCTCACTGTACCTACGCTTCGCCAGACACCTTCAAGCTCAAGCGACACATGCGTACTCATACTGGAGAGAAACCCTATGAGTGTGACATATGCCATTCAAAATTCACTCAGTCAAATTCGTTGAAAGCGCACAAGCTGATACACAGCGTAGGTGACAAGCCTGTATTCCAGTGTCATCTCTGTCCAACGACTTGCGGCCGTAAGACTGATTTGAGAATTCATGTTCAGAAGCTGCACACTTCTGAGCGGCCAATATCTTGCAAGAGGTGTGGAAAAATGTTTCCCGATCGGTACACATACAAAGTGCACTGTAAAACACACGAAGGTGAGAAGTGCTTTAAGTGTGAGCTTTGCCCATATGCATCCATATCACAAAGGCATTTAGACTCTCATCTATTGATTCATACGGATCAAAAGCCATTTGATTGCAAGTTCTGTGAGCAGTCGTTTAGACAGAAGCAGCTTCTGAGGCGTCACGTAAACCTCTATCACGATAAGAACTATGTCCGCCCGGAGCCACAGGAAAGAACCCATACTTGCCCCGACTGCAAGCGCGCATTTAGCCGAAAGGGAAATCTTATGAGGCATATGGCTTCTCATGATCCAGAATCtaaaattaatttggaaaaattgcaACTCAAGTTGGGTCGAATGaataaaatttctgaaaatgcTGAAGAAGGGTCCATAGAGATTTTAAGTGAGATTGACGAGGATGATGAAGAGTACGAAATGGGTGTAGAGGAAGAAGAAACATATATAAATCGAATGGATGCTGAAGAggacgacgaagaagaagaggaagcgGCGGTTTCTTTTTACGAGAACATGAACAGTCAGCTAGATACTGATAATAACACAGATGACATTAAATCGATCGTTATAAAGAAGGAAGATGAGAAGGAACTTGTTGCTCTTGAGGGTATCGACGGGCAGCAGTACGTGGTTCTTGAAGTGATTCAATGCGATGATGACAATGACCACGATGTATCGATTGGAAATGAGAAGTCCcacataaaaaatgaattggatgATGAATTCATCATTTCCGAATTTACAGATGAAGGGGTTAATATAATGAAATCATCAAAATCTGCAAGCATGGGTGACTGTTTTGGATTTAGTGAATCAGATGATAATATGGATATACGGGATGATAGCGATACGAACGGCGACAGTAAAACCGATATCCAGCTGCTGGAAATCCTACAATAA
Protein Sequence: MSDLQIKLESNELQTYLDTFNKEIEEGNQSLNTTLVETIDLGSMQSKEEEEDDDEENGTYFVDQAGNYYYQPTKDSEPIPTSPPDHIHQIIDDSDNEELTTVTKETSGKRRSPKTSIVKKSKIPKSEEDTNYVLILGDEKEDETNDENGQSNGNENDNDDDGDGDNVDDTEVYEFDENEEVSSKISSLLLSAKVVRLKTETSSANVSSHQCPHCEYVTSKRYLLARHMKCHSEERPHKCAVCERGFKTNASLQNHANTHTGNKPHRCRHCTSTFTTSGELVRHVRYKHTHEKPHKCFECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHMRTHTGEKPYECDICHSKFTQSNSLKAHKLIHSVGDKPVFQCHLCPTTCGRKTDLRIHVQKLHTSERPISCKRCGKMFPDRYTYKVHCKTHEGEKCFKCELCPYASISQRHLDSHLLIHTDQKPFDCKFCEQSFRQKQLLRRHVNLYHDKNYVRPEPQERTHTCPDCKRAFSRKGNLMRHMASHDPESKINLEKLQLKLGRMNKISENAEEGSIEILSEIDEDDEEYEMGVEEEETYINRMDAEEDDEEEEEAAVSFYENMNSQLDTDNNTDDIKSIVIKKEDEKELVALEGIDGQQYVVLEVIQCDDDNDHDVSIGNEKSHIKNELDDEFIISEFTDEGVNIMKSSKSASMGDCFGFSESDDNMDIRDDSDTNGDSKTDIQLLEILQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00316213;
90% Identity: iTF_00312880; iTF_00313715; iTF_00314580; iTF_00311253; iTF_00312053; iTF_00316213;
80% Identity: -