Basic Information

Insect: Cheilosia urbana
Gene Symbol: -
Assembly: GCA_946477595.1
Location: CAMLCJ010000024.1:919979-924338[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0086 1.4 10.7 5.8 1 21 210 230 210 232 0.95

2 11 1.1e-05 0.0019 19.8 1.6 1 23 238 260 238 260 0.98

3 11 0.00031 0.052 15.3 3.7 1 23 266 289 266 289 0.96

4 11 0.039 6.6 8.6 3.9 1 21 295 315 295 317 0.95

5 11 2.6e-05 0.0044 18.6 2.9 1 23 323 345 323 345 0.99

6 11 8e-05 0.013 17.1 2.0 1 23 351 373 351 373 0.98

7 11 0.00073 0.12 14.1 3.7 1 23 381 404 381 404 0.97

8 11 6.5e-05 0.011 17.4 1.4 2 23 411 432 410 432 0.97

9 11 0.0023 0.38 12.5 0.5 1 23 438 460 438 460 0.98

10 11 0.0001 0.017 16.8 2.4 1 23 466 489 466 489 0.94

11 11 4.6e-08 7.7e-06 27.3 1.5 1 23 503 525 503 525 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0086	1.4	10.7	5.8	1	21	210	230	210	232	0.95
2	11	1.1e-05	0.0019	19.8	1.6	1	23	238	260	238	260	0.98
3	11	0.00031	0.052	15.3	3.7	1	23	266	289	266	289	0.96
4	11	0.039	6.6	8.6	3.9	1	21	295	315	295	317	0.95
5	11	2.6e-05	0.0044	18.6	2.9	1	23	323	345	323	345	0.99
6	11	8e-05	0.013	17.1	2.0	1	23	351	373	351	373	0.98
7	11	0.00073	0.12	14.1	3.7	1	23	381	404	381	404	0.97
8	11	6.5e-05	0.011	17.4	1.4	2	23	411	432	410	432	0.97
9	11	0.0023	0.38	12.5	0.5	1	23	438	460	438	460	0.98
10	11	0.0001	0.017	16.8	2.4	1	23	466	489	466	489	0.94
11	11	4.6e-08	7.7e-06	27.3	1.5	1	23	503	525	503	525	0.97

Sequence Information

Coding Sequence: ATGTCGGACTTGCAAATTAAGATCGAAAGCAATGAATTGCAGACGTACTTAGATACTTTTAACAAAGAAATAGAGGAGGGCAATCAGAGTCTTAACACAACCCTTGTAGAGACCATTGATTTGGGGAGTATGGAGGGTAAAGAGGAAGACGAGGATGATGACGAAGAAAACGGTACGTACTTTGTTGATCAAGCAGGCAACTACTACTATCAACCAACCAAAGACTCGGAGCCAATACCTACTAGTCCTCCCGATCATATTCATCAAATAATCGACGACAGTGATAACGAGGAACTTACAGTTGTGACAAATGAAACATCTGGTAAACGTCGGAGCCCACAAACATCAGTTGTAAAAAAATCTAAAAGTCAAAAAAGCGAAGAAGATACCAACTACGTACTAATACTTGGGGATGAAAAGGACGACGAGACCAACGACGTGACCAACGACGAGAACGGCCAATCTAATGAAAACGAAAACGATAATAATGATAACGATAATGTCGGTGAAACAGAAGTGTATGAGTTCGATGAGAACGAAGAGATTGCGTCCAAAATATCTAGTTTACTTTTGTCAGCTAAGGTTGTCCGTTTAAAATCGGAAATCAATTCGGGAAATGGTTGTTCGCATCAGTGTCCTCACTGCGAATATGTGACAAACAAAAGATATTTACTAGCCCGTCATATGAAATGCCATTCCGAGGAACGTCCTCATAAATGTTCTGTCTGTGAGCGTGGCTTCAAAACAAACGCATCCCTTCAAAACCATGCCAATACACATACAGGGAATAAACCACATCGTTGTAGACATTGCGATAGCGCTTTTACGACATCTGGAGAGTTGGTACGTCACGTTCGTTACAAGCATACGCACGAAAAGCCACATAAATGTTTCGAGTGTGATTATGCCAGTGTGGAGTTGAGCAAACTTAAACGGCATATTCGATGTCACACAGGGGAGCGGCCATATCAATGCCCTCACTGTACCTACGCTTCGCCAGACACCTTCAAGCTCAAGCGGCACATGCGTACTCATACTGGAGAGAAACCCTATGAGTGTGACATTTGCCATTCAAAATTCACTCAGTCAAATTCGTTGAAAGCGCACAAGTTGATACACAGTGTTGGTGACAAGCCGATATTCCAGTGTCATCTCTGTCCAACGACTTGCGGCCGTAAGACTGATTTGAGAATTCATGTTCAGAAGCTGCACACTTCTGAACGGCCAATATCTTGCAAAAGGTGTGGAAAAATGTTTCCCGATCGGTACACGTACAAAGTGCACTCTAAAACACATGAAGGCGAGAAGTGCTTCAAGTGCGAGCTTTGCCCATATGCATCGATATCACAAAGGCATTTAGACTCTCATCTGTTGATTCATACGGATCAGAAGCCATTTGATTGCAAATTCTGTGAGCAGTCGTTTAGACAGAAGCAGCTTCTAAGGCGTCATGTAAACCTCTATCACGATTTGAACTATGTCCGCCCGGAGCCACAGGAAAGAACTCATACCTGCCCCGACTGCAAGCGCGCATTTAGCCGAAAGGGAAATCTTATGAGGCATATGGCTTCTCATGATCCAGAATCTAAAATTAATTTGGAAAAATTGCAACTCAAGTTGGGTCGAATGAATAAAATTCCTGAAAATATTGAAGAAGGGTCCATAGAGATTTTAAGTGAGGTTGATGAGGATGAAGAGTACGAAATGGAAATGGAGGAAGAAGAAACATATATAAATCGAATAGATGTCGAAGAGAATGACGATGAAGAAGAGGAAGCGGCGGTTTCCTTTTATGAGAACAGTCAGCTAGATACCGATAATAACACAGATGACATTAAATCGATCGTTATAAAAAAGGAAGATGAGAAGGAACTTGTTTCTCTAGAGGGTATCGACGGGCAGCAGTACGTGGTTCTAGAAGTGATTCAATGCGATGATGACAATGACCAGGATGCATCGATTGTAAATGACAACTCCcacattaaaaatgaattggaTGATGAATTCATCATTTCCGAATTTACAGATCAAGGGGTTAATATAATGAAATCATCAAAATCTGCAGGCATGGGTGACTGTTTTGGATTTAGTgaatCAGATGATAATATGGATATCCGGGATGAAAGCGATACGAACGGTGACAGTAAAAACAATATCCAGCTGCTGGAAATCCtacaataa
Protein Sequence: MSDLQIKIESNELQTYLDTFNKEIEEGNQSLNTTLVETIDLGSMEGKEEDEDDDEENGTYFVDQAGNYYYQPTKDSEPIPTSPPDHIHQIIDDSDNEELTVVTNETSGKRRSPQTSVVKKSKSQKSEEDTNYVLILGDEKDDETNDVTNDENGQSNENENDNNDNDNVGETEVYEFDENEEIASKISSLLLSAKVVRLKSEINSGNGCSHQCPHCEYVTNKRYLLARHMKCHSEERPHKCSVCERGFKTNASLQNHANTHTGNKPHRCRHCDSAFTTSGELVRHVRYKHTHEKPHKCFECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHMRTHTGEKPYECDICHSKFTQSNSLKAHKLIHSVGDKPIFQCHLCPTTCGRKTDLRIHVQKLHTSERPISCKRCGKMFPDRYTYKVHSKTHEGEKCFKCELCPYASISQRHLDSHLLIHTDQKPFDCKFCEQSFRQKQLLRRHVNLYHDLNYVRPEPQERTHTCPDCKRAFSRKGNLMRHMASHDPESKINLEKLQLKLGRMNKIPENIEEGSIEILSEVDEDEEYEMEMEEEETYINRIDVEENDDEEEEAAVSFYENSQLDTDNNTDDIKSIVIKKEDEKELVSLEGIDGQQYVVLEVIQCDDDNDQDASIVNDNSHIKNELDDEFIISEFTDQGVNIMKSSKSAGMGDCFGFSESDDNMDIRDESDTNGDSKNNIQLLEILQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00316213;
90% Identity: iTF_00315406;
80% Identity: -