Cvar022475.1
Basic Information
- Insect
- Cheilosia variabilis
- Gene Symbol
- Zfx
- Assembly
- GCA_951230905.1
- Location
- OX579679.1:1958004-1959987[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.2 5.9e+02 2.1 2.0 1 23 166 191 166 191 0.84 2 12 0.015 2.1 9.8 1.1 1 23 197 219 197 219 0.85 3 12 0.051 7.3 8.1 0.3 2 17 254 268 254 269 0.80 4 12 2.6e-05 0.0037 18.5 3.3 1 23 283 305 283 305 0.98 5 12 0.00016 0.023 16.0 0.0 1 23 311 333 311 333 0.95 6 12 1.8e-08 2.6e-06 28.4 0.2 2 23 339 360 338 360 0.97 7 12 0.018 2.5 9.5 0.6 2 23 368 390 367 390 0.91 8 12 2.8e-06 0.00039 21.5 3.2 1 23 414 436 414 436 0.99 9 12 4.3e-07 6.1e-05 24.1 2.5 1 23 442 465 442 465 0.96 10 12 0.00024 0.034 15.4 0.4 1 23 471 494 471 494 0.93 11 12 9.7e-05 0.014 16.7 0.7 1 23 500 522 500 522 0.98 12 12 1.8e-05 0.0025 19.0 4.2 1 23 528 550 528 550 0.98
Sequence Information
- Coding Sequence
- ATGTCTGAACAGGAGGATGGCTCGGATCTCTATCCAATGTACACCTCAACAGAATACCACAACGAATTAAGAATGATTTTGGAGGAATTCGAAATATGGAATTTAAACATCGCACAAGGTGATGGCTTGCCTCAGAAGATTTGCCTTACTTGTTTCGACAGTTTCTGTCAAATACACAACTTCCGTATGATATGCCAAGAGGCACAATCGAATTTTGGTGAACTATGTATTGGTCTGGATATTATAATCAAACTTGAAGCACAATATGCAGATGTTGATGTTGACTATCCAGAAGACTTCGAGGGCGAACAAACAATTACAGTTCAAGAACACTACCAGTTTCCCGTTGATGAATCACAAAAGGTTCCAGATGTAACCGCCGACTCGAAAACATGTGAAAAACTCTTGGAAACACATAACTCTGATGATGTGTTAGAAATGGCCCAAGAGATTGAGCTTGAGAAAGTGGTTGCAAATGTTTCCGACCGCCATCAGTATCAATGCGAATACTGCATGGATGTTGTCTGTTTCGATGACACAGAACTGCTTAATCAGCATTACAATGCCGTGCACTCGTCAGACCTTCCTTATCAGTGTCCCCAATGCGAAAAGTGTTTCGAGGCAAAAGCCAAACGCGATGGCCATGCTAGAGTCCACTTTCGAGAAACACTCGAATGTGAAACCTGTGGCAGGAAAATTCGTGGCGGTAAACGAATGATGGATCGCCACATTGAGGTGCATCACATCTTGAGGGTACGCGAATGTACTATATGTGGCAAGAAGTTTGACAAAATTACTCTGAAGAGATTTAACTACCACCAAAGCTGGCATAATGAAAACAAGTTGCACAAGTGCAAGTATTGTGACAAAAAGTTTATTCAAGTAAAACAATTAGTTGTGCACGAGAAGACGCACACCGGAGCGAATCCTTTTCTCTGCACTGAGTGTGCAGTTGGATTTACAACTGCGGATCTCCTTGAGGCTCATATTAAAATGCACGGAGTAGCGGATTTGCAATGCCCTATCTGCCCTAAATCATTCGCCCAACAACGTAACTTAAAGATTCACATGCAAATTCACGATCCGGAAAGGAAACACATGCGCTGCGACATTTGCCCAAAGCTTTTTGGTTCTACTATGAATTTGCGTCTGCATAACTACAAAAGACATGGTGCCCCATCCACACCTGCTATTCTTAATATCTTGGGAAAGCGCCAGAGTTCCAAGCTTATAAAACCCTTCAAATGTCATATGTGTTCACAATCGTTTGTTGTGCAAACACAATTGGAGAAGCATATAAAAACTCACAGTGAGAACAGGCCGTACTCTTGCAGTCAATGCGGCAAATCATTTAAGCGGGATTCCCATTTAAAGTTGCACATGGATTCGGTGCACTTAAACAACAAACCCCATAAGTGTTCTATCTGTGGATGGGGCTTTCTACAAAGAAGCAGCCTAAGGGAGCATATTGCTGCGAAGCATGAACATAGAAAGGATTTCAAATGCGATGTTTGTGAAAAGACGTTCGCTATTGCGAAAACGCTTAAGATTCATAAGCTCAAACACTTGGAAAGGAAACCATTTACCTGCACAATATGTGAAAAGAGCTTCAGACTACATAATACTCTAAGAACACATATGAATTCCCACTGGATTAAGAACGAAGCCAAAAAGGCCGCCGGTGCTACAAAATGTGAACTTTGA
- Protein Sequence
- MSEQEDGSDLYPMYTSTEYHNELRMILEEFEIWNLNIAQGDGLPQKICLTCFDSFCQIHNFRMICQEAQSNFGELCIGLDIIIKLEAQYADVDVDYPEDFEGEQTITVQEHYQFPVDESQKVPDVTADSKTCEKLLETHNSDDVLEMAQEIELEKVVANVSDRHQYQCEYCMDVVCFDDTELLNQHYNAVHSSDLPYQCPQCEKCFEAKAKRDGHARVHFRETLECETCGRKIRGGKRMMDRHIEVHHILRVRECTICGKKFDKITLKRFNYHQSWHNENKLHKCKYCDKKFIQVKQLVVHEKTHTGANPFLCTECAVGFTTADLLEAHIKMHGVADLQCPICPKSFAQQRNLKIHMQIHDPERKHMRCDICPKLFGSTMNLRLHNYKRHGAPSTPAILNILGKRQSSKLIKPFKCHMCSQSFVVQTQLEKHIKTHSENRPYSCSQCGKSFKRDSHLKLHMDSVHLNNKPHKCSICGWGFLQRSSLREHIAAKHEHRKDFKCDVCEKTFAIAKTLKIHKLKHLERKPFTCTICEKSFRLHNTLRTHMNSHWIKNEAKKAAGATKCEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00314587;
- 90% Identity
- iTF_00311256;
- 80% Identity
- -