Basic Information

Insect: Cheilosia variabilis
Gene Symbol: salm
Assembly: GCA_951230905.1
Location: OX579680.1:9666934-9679056[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.7e-06 0.00024 22.2 1.7 1 23 283 305 283 305 0.98

2 9 1.9e-06 0.00027 22.0 1.7 1 23 311 333 311 333 0.98

3 9 1.7 2.4e+02 3.3 2.5 5 23 553 571 550 571 0.85

4 9 9.6e-08 1.3e-05 26.1 0.2 1 23 577 599 577 599 0.98

5 9 0.00076 0.11 13.8 0.9 1 23 609 631 609 631 0.98

6 9 0.00077 0.11 13.8 0.2 3 23 787 807 786 807 0.98

7 9 0.00089 0.13 13.6 4.5 1 23 813 835 813 835 0.97

8 9 4.1e-06 0.00058 21.0 3.0 1 23 952 974 952 974 0.96

9 9 6.6e-08 9.3e-06 26.6 0.7 1 23 980 1002 980 1002 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.7e-06	0.00024	22.2	1.7	1	23	283	305	283	305	0.98
2	9	1.9e-06	0.00027	22.0	1.7	1	23	311	333	311	333	0.98
3	9	1.7	2.4e+02	3.3	2.5	5	23	553	571	550	571	0.85
4	9	9.6e-08	1.3e-05	26.1	0.2	1	23	577	599	577	599	0.98
5	9	0.00076	0.11	13.8	0.9	1	23	609	631	609	631	0.98
6	9	0.00077	0.11	13.8	0.2	3	23	787	807	786	807	0.98
7	9	0.00089	0.13	13.6	4.5	1	23	813	835	813	835	0.97
8	9	4.1e-06	0.00058	21.0	3.0	1	23	952	974	952	974	0.96
9	9	6.6e-08	9.3e-06	26.6	0.7	1	23	980	1002	980	1002	0.98

Sequence Information

Coding Sequence: ATGTGCTCGATTTTTCACAACCGAATTAATTACCGAGGTCCTAGGAGTACGAATGGTACTGGTGGTGGCAGTGAGCCATCATCCATCAAAGATGACCCAGATCGGAATAACAACAGTGGTGGTGATGGCCCAGATCCTCTGCTCCATATGCAACAGAGCGATGGCGAGGAGGACGACGACGGAGAGGAGAGTGTAGAGGAGGCATTGGACTTATCAGTGATGCCGCGTTTGCCGGCGACCGGACATGTTGCCCTTGAAGCGCTGCAGCACACGAAAGTGGCTGTGGCGCAATTCGCCGCCACGGCCATAGCAAACTCGCAGAACTATGACGAAGCAGTGAGTGATCTAGCTGTTGTGCAATCGACGATATTCAATGTGCAGCGTCAGCAGCTGATGCAGATGCAGCTGATACAGCACCTGCAGTCGCAGCTTAAGCACCGCGCCGAAGAAGACTATGACGACGAGGACGATGATGACGAGCCGGAGGAGGAAAGACTTATATTGAAGGAGGAGGAGGATGATAGCGTGATGTCTCGCCAGAGCACCGACTACATCCCAGAGAAAGAAAAGACTGAAATTAAAGAGGAAGAGAAACCGAGTGAGGAGCAGGAGTGCACCAAGGCATTCCAACCGCACCTGTGTGACATCAGTTCGTCATTTGCGTCGAGCATTATCACCAATCACGATCCTCCACCGCTGCCCAATGCACCGAATTGTCTAGAAATGCTGCAGCGACGGACCGAGGAGGTCCTTGACTCGGCCTCGCAGAGCGTGCATGCAAACCAACTGAACGATGAGTACGATTACTCGAAGAAGGACGGCCAGGGTAGGGGGGAGATCTTCAAACACCGCTGCAAGTACTGTGGGAAAATATTCGGTTCATATTCGGCTCTGCAAATTCACCTGCGATCGCACACCGGAGAGAGGCCCTTCCAGTGCAATGTCTGCGGCAGTAAGTTCACAACCAAGGGCAATCTGAAGGTTCACTATCAGAGGCATACTCAGATATTCCCTCCCATGCTTATGCCGCCTTCCCACAATCCTGAACAATACCCGCAATATCATCACCCAGGCATGGTGGCTCCTGGAAATCCACCTCTGCGTCTGCCATTTCCCCCGTTCGTTCAAACACCGCCGTTCCATTTGAACCCCTCTCCGATCCGAGATAAAGAGCCACAGCCGATTGAAAAGGTGCCGCAACTACAGCCAGAACCACAATCTCAACCAGAGCCCCAACCACAGACTGAGGCGCAAGATCTTCGAAAGGCAGTCACCGAAGTTGAAGACCGAACACATCCCATCGTCGAGACACCAAAGAAAGAGCCACCTACGCGTCAGGAAACCCTCATCCCTCCTCCGAGCATTCGTCGAAAGCGGACTTCCAGCCCCCGAGAGTCACATGCCCCACCATCAAGGCTTAGCGATGAAAATGTTCCCGAAAACCTGTCCAAGTCATCGCGGCGTTCATCCCTTAGCAGGGGATCGGCAACAAGCCTTGAGCCAATACCCTCCGAGTATTCACTGGCCCAGATGGAACGCCTAATCGACAAGTCCTGGGAAGACCTCATCGAGATCGATAAAACGTCAGAGACATCGAAACTGCAACAGCTCGTGGATAACATTGAAAACAAGCTCACCGATCCGAATCAGTGTATTTTCTGTCAGAAAGTTATGTCCTGTCGCAGTTCCTTGCAGATGCATATACGTACCCATACCGGCGAGAGACCATTTCGGTGCCGAATCTGCGGACGGGCCTTCGCCACAAAGGGCAACCTCAAGGCCCATATGAGCATTCACAAAATCAAACCTCCAATGCGTAGTCAATTCAAGTGTCCCGTTTGCCACCAGAAATTCTCAAACGGCATCATCTTGCAGCAACACATTCGGATACATACCTTGGACGACGGAGATGGTGGTGATCGAGCGAAATACAGCGAGATGTCTATGGTCAATGCTGAGGATCAGAGTTCCACGCGATCCATAAGCACTTCGGACAACATGGACTTCTCACAGTCCGAGTACTCTGGACAGAGGTCGGAATCTTCGCAGGGTGACTTCGACGATTTCACAATGGCCAGCGAGGAAGAGTCTAGAACGGAAGCGAACAGTGACGGGCGCAGGGAGGACAAGGAGCCAATTGACGAGTCCGAGGGTGCGAGCAATTCGGATGAGAATGGTGCAATGGACTTGTCGGCGAAAAGTGCCGACAGTGAAACTGTGAGTTCGGAAAATACCGGCGTTAGCTTAGTGCCGAATTTTCTTCTAATGCCGCGAGACAATCGAAGTCCACCGAAGTTTCCTATTCTGCCATTTGGACCGCTGGGGATTATTGCTGGTCTCCGTGGAGCGACAAACATCTGCAACATTTGTTTTCGCATCTTTCCCAACACCACCGAACTGGACCTTCACATTCGAACTCATACCAAAGAGGATAACTTCAAGTGCTCCATCTGTGATAAAGGCTGCGCCACAAAAGAGGAATTCCATCATCATATATTGGCTCACAGATTTCGTCGAGATTCTGGAGACTCCAGTCATAATCAAAACTCATCCAATTTTTCCAATGACGAAATACATCTGGAAGCGAGTCACAGGACTTTCAAAACTGAATTGAATACAAACGATAATCAAATACCACTGTCACCTAATGGAGGCTCATCGTCGACAATCACCTCCGACAACAATATCGGAGGCGATGCTGAACATTCCCTAATGAAGATGAAACTTCTTTCTTCGCTGCCCAATGAGTCCCATATGCAGTCGTCTTCGGAAACAACTCGATACACTCCGAACTCAGTGTTGAAGCAACAAGAGCTCCAGCAAAACGCCCAAGAACAACCGGCGAACAATAAACACTTCTGCACGGTTTGCCGAAGAAATTTCAGTTCTAGCTCAGCGTTGCAGATACACATGCGAACTCATACAGGAGATAAGCCATTTCAGTGCAATGTGTGTCAGAAGGCCTTCACCACTAAGGGAAATCTGAAGGTTCATATGGGCACCCACATGTGGACAAACCCAGCCTCGAGACGTGGCCGCCGCATGTCGCTAGAGCTTCCAATGCATAGGCCCAACCTGCCACCGTTAGGAACACATCAAGACTCTGAACTCCTTTCCCGCCGGCCGGAGATATTCTTTCCCTATTTACCGCCATTCTTCAATGGTCTACAACCAAAGCCTGTCGATCTACCATCAGGATCATTTCCGGGTCTCCCACCACCCCCTTTCCCCAATGGACCACCCTATAACTTCCCTCCACTACCAAATTTAGATCAAATTACCAAATCACCCGTGGGCGAGAAACACTCTAGAAGTCCACACGCAAGTCCCACAAATGGACCGTCACATCACCATCAACACTATAGCAATCAGCAATCGCTTTCTAAAAAGGACTTTCACCACGATGAATTCGTCAAAGGATGA
Protein Sequence: MCSIFHNRINYRGPRSTNGTGGGSEPSSIKDDPDRNNNSGGDGPDPLLHMQQSDGEEDDDGEESVEEALDLSVMPRLPATGHVALEALQHTKVAVAQFAATAIANSQNYDEAVSDLAVVQSTIFNVQRQQLMQMQLIQHLQSQLKHRAEEDYDDEDDDDEPEEERLILKEEEDDSVMSRQSTDYIPEKEKTEIKEEEKPSEEQECTKAFQPHLCDISSSFASSIITNHDPPPLPNAPNCLEMLQRRTEEVLDSASQSVHANQLNDEYDYSKKDGQGRGEIFKHRCKYCGKIFGSYSALQIHLRSHTGERPFQCNVCGSKFTTKGNLKVHYQRHTQIFPPMLMPPSHNPEQYPQYHHPGMVAPGNPPLRLPFPPFVQTPPFHLNPSPIRDKEPQPIEKVPQLQPEPQSQPEPQPQTEAQDLRKAVTEVEDRTHPIVETPKKEPPTRQETLIPPPSIRRKRTSSPRESHAPPSRLSDENVPENLSKSSRRSSLSRGSATSLEPIPSEYSLAQMERLIDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCRICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTLDDGDGGDRAKYSEMSMVNAEDQSSTRSISTSDNMDFSQSEYSGQRSESSQGDFDDFTMASEEESRTEANSDGRREDKEPIDESEGASNSDENGAMDLSAKSADSETVSSENTGVSLVPNFLLMPRDNRSPPKFPILPFGPLGIIAGLRGATNICNICFRIFPNTTELDLHIRTHTKEDNFKCSICDKGCATKEEFHHHILAHRFRRDSGDSSHNQNSSNFSNDEIHLEASHRTFKTELNTNDNQIPLSPNGGSSSTITSDNNIGGDAEHSLMKMKLLSSLPNESHMQSSSETTRYTPNSVLKQQELQQNAQEQPANNKHFCTVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPASRRGRRMSLELPMHRPNLPPLGTHQDSELLSRRPEIFFPYLPPFFNGLQPKPVDLPSGSFPGLPPPPFPNGPPYNFPPLPNLDQITKSPVGEKHSRSPHASPTNGPSHHHQHYSNQQSLSKKDFHHDEFVKG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00389819;
90% Identity: iTF_00311251;
80% Identity: -