Curb012496.1
Basic Information
- Insect
- Cheilosia urbana
- Gene Symbol
- rfx7.L
- Assembly
- GCA_946477595.1
- Location
- CAMLCJ010000095.1:317735-328392[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.5e-32 5.6e-28 98.6 0.0 3 78 264 339 262 340 0.97 2 3 0.59 1.3e+04 -1.9 0.1 22 44 662 684 656 685 0.84 3 3 1.1 2.3e+04 -2.7 0.0 22 41 1153 1172 1145 1179 0.79
Sequence Information
- Coding Sequence
- ATGTCCGACAAAAATGTACACCAATTGCAGTGGAAACAAAAGAATTCAGATCAATCGATATACGCCTCGAGAAATGCGAACATTCAATCAACATCACCGATCGCTAATCAGCAGTCCACAGCTGCTGGCTCAGCTTCAATTCATCCATCACATTCGGGGACGGCTTCGAATGGACGTTACCCGATAATTGGTAGTCAGCAGCAGGTCGTAACCTctccatcatcatcaacatcatcaaCAAAAACTTCAATTGGTCTTCAACAACATTTTCATACTATGCAACACcttcaacatcaacaacaacaacaacaacaccatcatcaacagcagcggcagcaacaacaacaacaacatcaacaacaacaacagcatagTCATCCTCATCAACAGAACCCGCATTTTGAATTATCAAAGATTATGGCTATGAACTCGGGTGCAGTGTCCAGATTGGAGTTGCCTCCAGCTTTGGGTAATCACCCTGTTTCCAGTGCGATAACGGAGAATGTCTTAAGCCTGATTGGCAGTATGTCTAGCAGTGGGAACAGTTCTAATACGAAtagcgatgacaacaaaattccAGATGAAGAAAAGCTACGAAGAGTTCAAGCTATTGTTGAGTCTGGCATTGGCGACCATGCCAAACAACAGATTCTACAAATCCTCGACCGAATTTCTACACTCAAGCCTGTTGAGCGATTACTTTTGTACCTTCGGATGCCGGGAGAGACACCAGAATCAGATCCTCTTCGGCAGCCACAAAACCCACTTGGAACTAGATCTGAAATAAATCACACCATCAattgggtgcgttcacacttGGAGCACGATCCAAAGGTTTCCATTCCAAAGCAAGATGTTTACAACGATTATATGGCATATTGTGAACGTTTGGATATAAAACCTCTGTCGACAGCTGACTTTGGCAAAGTGATGAAGCAAGTGTTTCCCGAAATTCGTCCCAGACGTTTAGGCACACGTGGCCACTCGCGTTATTGTTATGCAGCGATGAGAAAAACCACAAAGCTAACTCCACCACAGCTTCCCACGATTGGTGGGCGAACTGTAGACACCGTGAGTAGCCGTGAAATTGAATGCGATCCGGATGCAGACTCATGGAGCACTGTTCGTACCTGGGCCGAGGGACTGCTTAATGCGAAGTTCGATAGCTTAAAGGATTTGGCCGAGCACATTGGAAAGAATGAGTACCTAGGAGGTGGAGCGGGGAGCTCGCGAGTTTTACTCCAAAAGAAACTACTACAAAGGGACGCAAAAGAGAAGAGGGTTTATGCGGACTCGGGACCGCTCAAGAAACGGCGAAAGAAAAAACGCAAAGGTTCGACATCCTCCGAATCGAGCAGCACAACGCAACAAGCGTCACTAAACGAACCATTGCGATCCAATGAAGATATTCTCCTTGGCGTAGAAGAAATCAAACAAGAAATTCTAGATTCACCAAATTCACAGCAGTCAACACTACCGCAAATGCACTTGCACCAACCAGCCGCCCCCTATGATAGCCAGATGCACGGCCATCAATTGCTTCCAATGAATTTAGCCACTGAGAACGAGCGCAGCAAGACCTTGGGTGGCCTCCTACCAATAAACAGTCCAGTGGCGAAAAATCTCTCAAAACCCATCGCAGACCTACCACCATCGGTGAGCCTGTTGCCAATCGACCCACAAACAGCACAACTAGCCTCTGTCAAAGAGGAGATAATCAACGATGAATACAATCCACAGAATGTGATATGCAAGAAGGTACGGAGGGCACACCTGACGAAAGGTATTCTGCCCACTAACCACCCTCCATCTTCAACAATCACCACTGCTGAAGCGATGCCTGCAGCGCCACACGTCGAACTATCACCAGCCGATGTGAGTAACTACCCTATGGGACCACCAGCACAGATCACAACGACTGCAATGGAAAGTGCGAAGTTAGCGTCACAGGTGCGTGCGAGAAAACTGCGATTACTGCAGGCTCACAACGAGATGTATCAGACATACGACgcgcaacaacaacagcagcagccggCTCACATACAACAGGCACCGCCTCTAATGGATAATGTTGAAATAACAGAGGACAAAGATGTGGTGCTGCCAGAAAACCTTGGCCTACCGCGTGAGCGTGTAATTAGTATTTGCAACATGGACAAACACGAATTAGATGACTATTTGAATGCAAACGACGAAGACAACTCCCAGGATCAAGAAGCGGAACTGATTCAATATTTTCAGACGGGAGACGCTGAGAACAAcattaataacaacaacaacaaggcaacgctgcagcagcaacaactccagcaacatcagcagcagcaacaaaccATAGATGCGCATAACCCAACGTTGGCAGAGTACAACCCCAATTCGGCATTTCAAGTTAACAGCAATAACAACAGCAACAAGAAAAAATCAATGATTGGTACAGCTGGCGGCTGCTACACAAGAGATCGTGATGACATCACACAGCTTCGTAATTATCTTCATCAGAATTTTAACAAGGATTCGAATGATTCAATGGGAGCACTAGCCGCAGCCACAGCTACACTAAATCAGCGAACAAATGTCCAAGGACAGAAATTTCAGCCGAATGGAAATCACTACATCATGCCtgGGGTATACAACGAAGGGTCAGCCTCAGCGTCTCTAGCAATCATGTCTCAAAAGCATCTAAACGAAACATCATCACCATCGATAGCGATACCCGCCGCTGCGGCGGCCACACTATCAATAACAACAACGACCACAACAGCTTCTGTTAGCAACGCCAATCTAAGGGTAAATCATTCGATTCTACCCGTCGATGATTATACACCCGTTCCAAACAATATGCGCGCAACGCAGAAGCGAAAAATAAATCTAAACGCAATGGTACCTGCCCCAAGTACAACGCAACGGCGGAAGAACTGTACTTTTTTTCCAATTTCGCCAAACATAAATAATCTTAGCAATACTACAACAAACAACGGCAACAGCTCGTCTGTGTCCTGCACATCCTCTATGTCATCGACAACAAACACCAATCTGTTTGCTAGTCCAAGATTGACCGCCTCTTTGGTGCGTAGCAAACCAACGCTGCATAAACAGCAATCGCTGCCAGCGGCCGATAAGCCCACCATCTCGTCCGCCAACGATCCAATGACAGGGGCAAATCGCAACAACAGAAATTACAGCACCATCACATCAGCATCGGCGCCGCCTAGTCCTTCGATACTGCAAGACACTACGATGTTTGGCAAAAATTACAATACCGCCAATCATATGAGTGCATACAATCCGCTTCTATCCAATCAAGACTACCAACAGGCCTTTGCCAACACAAACAAAATGCTAACAAACGATCAGAACTCGTTGGAGTCTGTGCTAGATGAGCCACCGCCACATTTGATGGCTGAATCGCGTTCGCGTTCTGTGCCACTACAATATTGCAACAGTCCTGCCTTCAATCAAACTGCGACCTATACTGGCTTCTCGTCGACGTGTAACTCGGCGGCGCAGACGCCAGTGCCGACACAATTTGCTGACTTTAGCGATCCCTCGTCGATTTTGGACATCTTTAGCGATGCGAGTCAAACGCACGGATCCGCAATCAAAATGGATGAATCCGCCGGTGGTCTGTTATGCGGTTCTGTTGCCGACATCCTCCCTTCGGAGTATGGTCGCATTCCGGCGAATAGTTTCGGCACAATAGCGTCACGTTCAGTGCCATCTACGCCATTGCCGCTGCATAACATGACCGATCCGTTCTTAGGCAACAGCAAGAAGCATCACCAGAAACACGACAACTTTCCCAGTGCACAGAGTAAATATTCAACAAAAATGTACGACATCTCCAAGTCGATGCCTACGACGCCGATAACATCCAACACGGCTACACCATCGTTCCGCTACAGTCCGGAATTCAATCGAGACTTTCTCATCAACGGCAACACCGTAGAGAGCACACCAGCGTATAGTCGAGCGCCATCTGTTGCCGGAGCTACAGCCCCCAGTCTATCCGATTCACTGCTTGATGACGCCCGCGAAGGCGGATCCAATTCCCTCACCGACGGCATGGATGATTTGGGCAGTTTCGGCGAAGTTTCCGAGTCCATTATCGAAGCGGACATCTTGAACATGAACAATCTTTGA
- Protein Sequence
- MSDKNVHQLQWKQKNSDQSIYASRNANIQSTSPIANQQSTAAGSASIHPSHSGTASNGRYPIIGSQQQVVTSPSSSTSSTKTSIGLQQHFHTMQHLQHQQQQQQHHHQQQRQQQQQQHQQQQQHSHPHQQNPHFELSKIMAMNSGAVSRLELPPALGNHPVSSAITENVLSLIGSMSSSGNSSNTNSDDNKIPDEEKLRRVQAIVESGIGDHAKQQILQILDRISTLKPVERLLLYLRMPGETPESDPLRQPQNPLGTRSEINHTINWVRSHLEHDPKVSIPKQDVYNDYMAYCERLDIKPLSTADFGKVMKQVFPEIRPRRLGTRGHSRYCYAAMRKTTKLTPPQLPTIGGRTVDTVSSREIECDPDADSWSTVRTWAEGLLNAKFDSLKDLAEHIGKNEYLGGGAGSSRVLLQKKLLQRDAKEKRVYADSGPLKKRRKKKRKGSTSSESSSTTQQASLNEPLRSNEDILLGVEEIKQEILDSPNSQQSTLPQMHLHQPAAPYDSQMHGHQLLPMNLATENERSKTLGGLLPINSPVAKNLSKPIADLPPSVSLLPIDPQTAQLASVKEEIINDEYNPQNVICKKVRRAHLTKGILPTNHPPSSTITTAEAMPAAPHVELSPADVSNYPMGPPAQITTTAMESAKLASQVRARKLRLLQAHNEMYQTYDAQQQQQQPAHIQQAPPLMDNVEITEDKDVVLPENLGLPRERVISICNMDKHELDDYLNANDEDNSQDQEAELIQYFQTGDAENNINNNNNKATLQQQQLQQHQQQQQTIDAHNPTLAEYNPNSAFQVNSNNNSNKKKSMIGTAGGCYTRDRDDITQLRNYLHQNFNKDSNDSMGALAAATATLNQRTNVQGQKFQPNGNHYIMPGVYNEGSASASLAIMSQKHLNETSSPSIAIPAAAAATLSITTTTTTASVSNANLRVNHSILPVDDYTPVPNNMRATQKRKINLNAMVPAPSTTQRRKNCTFFPISPNINNLSNTTTNNGNSSSVSCTSSMSSTTNTNLFASPRLTASLVRSKPTLHKQQSLPAADKPTISSANDPMTGANRNNRNYSTITSASAPPSPSILQDTTMFGKNYNTANHMSAYNPLLSNQDYQQAFANTNKMLTNDQNSLESVLDEPPPHLMAESRSRSVPLQYCNSPAFNQTATYTGFSSTCNSAAQTPVPTQFADFSDPSSILDIFSDASQTHGSAIKMDESAGGLLCGSVADILPSEYGRIPANSFGTIASRSVPSTPLPLHNMTDPFLGNSKKHHQKHDNFPSAQSKYSTKMYDISKSMPTTPITSNTATPSFRYSPEFNRDFLINGNTVESTPAYSRAPSVAGATAPSLSDSLLDDAREGGSNSLTDGMDDLGSFGEVSESIIEADILNMNNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00724509;
- 90% Identity
- iTF_00310751;
- 80% Identity
- -