Csor008176.1
Basic Information
- Insect
- Cheilosia soror
- Gene Symbol
- -
- Assembly
- GCA_948107745.1
- Location
- OX443561.1:154437391-154439975[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0013 9.7 7.1 0.1 22 45 210 233 205 236 0.85 2 4 0.0031 23 5.9 0.0 22 44 238 260 235 265 0.89 3 4 0.0021 15 6.4 0.1 26 47 326 347 319 352 0.85 4 4 0.004 29 5.6 0.0 21 45 349 373 346 379 0.90
Sequence Information
- Coding Sequence
- ATGGATGTTCGGGTAAAAGCTGAACCGGAAACCCATATCATTGGGTTAAGCAATGGTATGCAATATGTCCCATACGAACATTTTACACAATACCAAATCATGCCACCGAATGGCGTGGAACCACCTATGTATCAATACCCCATCAGTGGTTACGATACCCAACATCAACTTTTCTAtcaacaccagcagcagcagcagcaaccgaACACCGAAGAAAACCAATACCATAGTGCCTATGACCAAAATAATTGCACTTATGAAGAGGTAGACCCAAATCAAAAGTATGAGTACCATGAACCTGATGAGAACTTCATATCCATTGATGATGCAAAAGTCCGGTCGTTTCTCCTCGATTTGTTGCAGAAAGAGAAGGAAAAGAAGAAGGCGGAAGAGGAAATGGAGGCGAGAAGAAAATTAGAACTAAAAACCGAAGAGGACAATTCTGTCAATGCaattgaaaatattgccgaTGATCAGGCGATGAACGAGAGTGACGAGAGTACAATGCAAGATATCGAGTACGATGAGGACGGGGAGATAGTTCTCTTGGACTCGGATATGGATTATGTGGATGAGAACGAAGAAGGCATTGAGCTGAATTGGATTGACTTGGAACAGAAGGCACAAAAGCAATCAATTGAATGTTTTCTCTGTGGCAAGAGTGTAGTCTCCAGTTACAACCTTCGAAGGCATATGATGATACATACAGGCGAACGTCCCTTCGGCTGTGATATGTGTTACAAACGCTTTCGCGAATTCAGTGACCTGAAAAAGCATCGCCGCGTGCATTCCACTCAGATGAACTTCAAGTGCATGGTGTGTCGCGTCAATGAACCTTCATCGTATGATCCAACAAAATGTGTTGCTTGCGACAAAAGTACTCCCGGCGATGGTACACAAGAAATGGCGGACCTGCTGCTTGATAGTGTCCCAAATGTCGCCACACCCACAACTGCCGGCGGCAAAAAGCAATTCCCTTGTCCGATGTGTAATCGTATTTTCGGTACACGACATAATCTCAAGCGACACTTTATGATACACACTGGTGAGAAGCCATTTAGTTGCAGCATCTGCCAAAAACCGTTTCGCGAGGTGTCTACACTGAAGAAGCACATGCACACTCATACCAAAGTGAAGGTATACAAGTGCTGCCACTGTAACGAGCGATTCACCGACTACGATTCATACGTGGAACACAAGGATACACATCCAAAGAAAAGTACAGCAGTGAAAAGAATGAGAGGCTTAAAAGGTCATGCAATGCCAAGCAAACGACGGCGTAGTGACACCGAATCAGCGGTGGCAGATGACGACGAAGAGTTCGAGTGTCCAGAGTGCGGCGAAAAATCGGCTTCTATTGAACTATACGCAGATCACATCAAGCAGCATGATTCGTCAGTAGAGTTTCAGTGCTACATTTGCAAGGAAATGTTCGAGTCCAGAGATTTGTTGGTGTCACATTTTACCTTGCACGATGTGGACGATGAATCAAGTGCAGATGGTTAG
- Protein Sequence
- MDVRVKAEPETHIIGLSNGMQYVPYEHFTQYQIMPPNGVEPPMYQYPISGYDTQHQLFYQHQQQQQQPNTEENQYHSAYDQNNCTYEEVDPNQKYEYHEPDENFISIDDAKVRSFLLDLLQKEKEKKKAEEEMEARRKLELKTEEDNSVNAIENIADDQAMNESDESTMQDIEYDEDGEIVLLDSDMDYVDENEEGIELNWIDLEQKAQKQSIECFLCGKSVVSSYNLRRHMMIHTGERPFGCDMCYKRFREFSDLKKHRRVHSTQMNFKCMVCRVNEPSSYDPTKCVACDKSTPGDGTQEMADLLLDSVPNVATPTTAGGKKQFPCPMCNRIFGTRHNLKRHFMIHTGEKPFSCSICQKPFREVSTLKKHMHTHTKVKVYKCCHCNERFTDYDSYVEHKDTHPKKSTAVKRMRGLKGHAMPSKRRRSDTESAVADDDEEFECPECGEKSASIELYADHIKQHDSSVEFQCYICKEMFESRDLLVSHFTLHDVDDESSADG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01541692;
- 90% Identity
- iTF_00725046;
- 80% Identity
- iTF_00313787;