Csor016340.1
Basic Information
- Insect
- Cheilosia soror
- Gene Symbol
- ZFX
- Assembly
- GCA_948107745.1
- Location
- OX443563.1:21001187-21010842[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.00047 3.5 8.5 0.1 13 45 45 77 38 81 0.86 2 7 6.7e-05 0.49 11.2 0.2 21 51 81 111 78 113 0.91 3 7 0.00063 4.6 8.1 0.0 21 45 138 162 130 165 0.90 4 7 0.0001 0.75 10.7 0.1 26 54 171 198 166 198 0.89 5 7 0.014 1e+02 3.8 0.1 26 48 199 221 196 227 0.89 6 7 0.014 1e+02 3.8 0.1 21 45 276 300 270 309 0.84 7 7 0.26 1.9e+03 -0.3 0.3 21 49 304 333 296 336 0.76
Sequence Information
- Coding Sequence
- ATGAATCAAAGTATCGACGTGAAAAAGTTCGACTGTGAAGACGACGCAAGTCGTTCTTTAAGGGACAGTGGCATATCCATAGGCGACGCGTTTTCCGAAAACGAACCAGAAGTCAAGACAAGCATATCGGCGAATAAGAAGAAGGTACGAAAAAATGCAGCCAGAAGCAAGGACTGCCACATCTGTGTGAGGACGTTTAAAAACGGCACTGATCTGCGACGTCACCTTCTCATTCATACCAATGAGAAGCCTCACGAATGCGAGATATGCAAGAAGTCTTATCGACAAGAAGTAAATTTGAATAATCACATCATAATGGTGCACACGAACAAGAGAGATTTCAAGTGCCAGTTCTGCAGGAAGCCATTCGGACTAAAAACGCAGCTAAAACATCATTTGCGAATTCATACCGGAGAGAAGCCTTATTCGTGCCCTATATGTGAAATGAGATTCGCCCAAGGTGGACAACTTGAAAAACATATGGATACACATGGGCCACGTGAAAAAAAGTGCTGCGAACTTTGTTTTACCAAATTTACAAGTGCCCGCAATTTGAGGATACATATGGAACGTCACGAACAGGGGCCGGGGATTGTTTGTCACATATGCAGCAAAATATTCCAGAACGATCTTGTTTTGAAAACTCATCTGAAATTGAACCATGGCAAAGTAAAGCCTGAATGTCAGATTTGTGAGTTGATGGTTGAAGGCGATATGCATGCTCATATGAAAACGCATTTTCCCAATAAGCCCGTTGAGTGTGAGTTTTGCAATGCTAGATTTAGCTCCAAAGCTCAGTATTCAATTCACAAGAGGACACATACAGGAGAGAAACCATATCAGTGCAGGGTTTGCTGGCAAAGCTTTGGACATAAAAACGTCCTTAAACGTCACGTACGAAAACACACCGGAGAAAAGCCGTTCCAATGTGTCCTATGTAATTCAACAGCTTTCTCTCAACTGTGTCACCTAAAAACCCATATGCGAACAATTCACTATAAAGATAAAACTTATGTTTGTGAAGGATGCAAGGAGTCCTTCAAAGTTATGTTTCAACTCGAAAGGCACAAAGAATTTTGTGACAAAACTGATCCACCAACTGAGTTTGATGATTTTGAACGTGAAAAACGGCGAAAAGATGACCAGTTACTCACTCGTCTGAGATACCTTATAGCAGTGCTTTTAAAAAAGATTTCGACAGAAGAGAAACTCGCTGAACTGGGCTTCGACAAAAGACTAATAGACCATGTACTAATTGCCTCGTTGAAAGTGGCAAATCGAAAGTGCTATCAAAGCAAGAAAATGGATGAGCTCGATCGAATGAAATTAAATATACAGGAATTTTTAGAATGGATTGTTCCTGCAAATATATTAGATGTATTCAAAAAGGATTGCGAATCCATTGAGATTATCTTAGATATGATAGTAACAATGTATTTGAAGGAAAAAATAGTCATATAG
- Protein Sequence
- MNQSIDVKKFDCEDDASRSLRDSGISIGDAFSENEPEVKTSISANKKKVRKNAARSKDCHICVRTFKNGTDLRRHLLIHTNEKPHECEICKKSYRQEVNLNNHIIMVHTNKRDFKCQFCRKPFGLKTQLKHHLRIHTGEKPYSCPICEMRFAQGGQLEKHMDTHGPREKKCCELCFTKFTSARNLRIHMERHEQGPGIVCHICSKIFQNDLVLKTHLKLNHGKVKPECQICELMVEGDMHAHMKTHFPNKPVECEFCNARFSSKAQYSIHKRTHTGEKPYQCRVCWQSFGHKNVLKRHVRKHTGEKPFQCVLCNSTAFSQLCHLKTHMRTIHYKDKTYVCEGCKESFKVMFQLERHKEFCDKTDPPTEFDDFEREKRRKDDQLLTRLRYLIAVLLKKISTEEKLAELGFDKRLIDHVLIASLKVANRKCYQSKKMDELDRMKLNIQEFLEWIVPANILDVFKKDCESIEIILDMIVTMYLKEKIVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00312052;
- 90% Identity
- iTF_00312903;
- 80% Identity
- iTF_00313729;