Csor009404.1
Basic Information
- Insect
- Cheilosia soror
- Gene Symbol
- rfx7.L
- Assembly
- GCA_948107745.1
- Location
- OX443562.1:15122563-15130015[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4e-32 3.9e-28 98.5 0.0 3 78 258 333 256 334 0.97 2 3 0.57 5.5e+03 -1.3 0.4 22 44 654 676 646 677 0.85 3 3 3 2.9e+04 -3.6 0.0 24 41 1146 1163 1138 1167 0.82
Sequence Information
- Coding Sequence
- ATGTCCGACAAAAATGTACACCAATTGCAGTGGAAACAAAAGAATTCAGATCAATCGATATACCCCTCACGAAATGCGAACGTTCAATCAACATCACCGATCGCTAATCAGCAGCCCACAGCTGCTGCCTCAGCTTCAATTCACCCATCACTTTCGGGGACGGCTTCGAATGGACGTTATCCGATAATTGGTAGTCAGCAGCAGGTCGTAACCTCTCCagcatcatcaacatcatcaacaAATACTTCAATTAGTCTGCAACAACATTTTCATACTATGCAACAccttcaacaacaacaacaccatcaccagcagcagcaacaacaacaacaacaacaacaacaacaacaacagcatcaTCATCCTCATCAACAGAATCCGCATTTTGAACTATCAAAGATTATGGCTATGAACTCGGGTGCATTGTCCAGATTAGAGTTACCTCCAACTTTGGGTAATCACCCTGTTTCGAGTGCGATAACAGAGAATGTCTTAAGTCTGATTGGGAGGTCTAGCATTGGGAATAGTTCTAATACGAATAGCGATGACAACAAAATTCCAGATGAAGAAAAACTACGAAGAGTTCAAGCTATTGTTGAGTCTGGCATTGGCGACCATGCCAAACAACAGATTCTGCAAATCCTCGACCGAATTTCTACACTCAAGCCCGTTGAGCGATTACTTTTGTACCTTCGGATGCCGGGAGAAACACCAGAATCAGATCCCCTACGGCAGCCACAAAATCCACTAGGAACTAGATCTGAAATAAATCACACAATCAATTGGGTGCGTTCACACTTGGAACACGATCCAAAGGTTTCCATTCCAAAGCAAGATGTTTACAATGATTATATagcaTACTGTGAACGTTTGGATATAAAACCTCTGTCGACAGCAGACTTTGGCAAAGTGATGAAGCAAGTGTTTCCCGAAATACGTCCCAGACGTTTGGGCACACGTGGTCATTCACGTTATTGTTATGCGGCGATGAGAAAAACCACAAAGCTGACTCCACCACAGCTTCCGACGATCGGTGGACGAATTGTAGACACTATGAGTAGCTGTGAAATTGAATGCGACCCGGATGCAGAGTCATGGAACACGGTTCGCACCTGGGCCGAGGGACTGCTTAATGCTAAATTCGATAGCTTAAAGGATTTGGCGGATCACATTGGAAAGAATGAGTACCTAGGCGGTGGAGCAGGTAGCTCACGAGTCTTACTCCAAAAGAAACTATTACAAAGGGACGCAAAAGAGAAGAGGGTCTATGCGGACTCGGGACCGCTTAAAAAACGGCGAAAGAAAAAACGCAAAGGTTCGACATCCTCCGAATCGAGTAGCACCACACAGCATGCTTCACTAAACGAACCAGCCCAATCCAATGAAGATATTCTCCTTGGCGTACAAACAATCAAACAAGAAATTCTAGATTCACCAAATTCCCTAGCGCAGATGCATTTGAACCTACCTCCCACCCCCTATGATACGCAGATGCATGGCCATCATCAACTGCTTCCAATGAATTTAGCCAGCACAGAGAGCGAGCGCAGCAAGACCTTGGGTGGCCTGCTACCAATAAACAGTCCAGTGGCGAAAAATCTTTCAAAAACTATAGCAGACCTACCACCATCGGTGAGCCTGTTGCCAATCGATCCACAAACAGCACAACTAGCCTCTGTCAAAGAGGAGATAATCAACGACGAATACAATCCACAGAATGTGATATGCAAGAAGGTACGTAGGGCACACCTAACGAAGGGTATTCTACCCACAAACAACCCTCCATCTTCAACAATCACAACTGCTGAAGCAATGCCTGCAGTGCCACACGTCGAACTATCACCAGCCGATGTAAGCAACTACCCTATGGGACCACCAGCACAGATCACGACCACTGCAATGGAAAGTGCGAAGCTAGCCTCACAGGTACGCGCAAGAAAACTGCGATTACTGCAGGCTCACAACGAGATGTATCAAACATACGACgcacagcagcaacagcagcagcaggcTAACATACAACAGTCACAGCCTTTAATGGACAATGTTGAGATAACAGAGGACAAGGATGTTGTGCTGCCAGAAAACCTTGGCCTACCGCGTGAGCGTGTGATTAGCATTTGCAACATGGACAAACACGAGTTAGATGACTATTTGAATGCAAACGACGAAGACAACTCCCAGGATCAAGAAGCGGAATTGATTCAATATTTTCAGACGGGAGACGCTGAgaacaacaataataacaacaacaacaaggcaacgctgcagcagcaacaacaccaccaacatcatcagcagcagcaacaacccATAGATGCGAATAACCCAACGTTGGCAGAGTATAACTCCAATTCGGCATTTCAAgttaacaacaataacaacagcaACAAGAAAAAATCAATGATTGGCCCAGCTGGCGGCTGTTACACAAGAGATCGTGACGACATCACACAGCTTCGTAATTATCTTCATCAGAATTTTAATAAAGATTCGAACGAGACAATGGGAGCACTAACCGCAGCCACAGCTACACTCAATCAGCGAGCAAATGTCCAAGGACAGAAATTTCAGCCGAATGGAAATCATTACATCGTGCCTGGCGTCTACAACGAAGGGTCCGCCTCAGCGTCTCTAGCAATCATGTCTCAAAAGCATCTAAACGAAACAGCATCACCAGCGATATCGGCCGCTGCAGCGGCATCACTATCAATAACACCAACAACCACTACAACTTCTGTCAGCAACGCCACCCTAAGAGTAAACCATTCGATCTTACCCGTCGATGATTATACTCCCGTTCCAAACAATATGCGCGCAACGCAGAAGCGAAAAATCAATCTAAACGCAATGGTACCTGCTCCCAGTACAACGCAACGGCGAAAGAACTGCACTTTCTTTCCAATTTCGCCAAACATAAATCTTACCAATACTACAacaaacaacagcaacagctcaTCTGTGTCCTGCGCCTCCTCCATGTCAGTGACGACGACTAATACAAATCTATTTGCTAGTCCCAGATTAACCGCCTCTTTAGTGCGTACAAAACCAACGCTGCATAAACAGCAATCGCTACCGGCGGCCGATAAGACTACCATCGCGTCCGCCAACGATCCAATGATAGGCGCTAATCGCAACAATAGAAATTACAGCACAATTACATCAGCATCGGCGCCACCCAGTCCTTCGATACTGCAAGACACTATGATGTTTGGCAAAAATTACAACCCCGCCAATCCTATGAGTGGATACAATCCACTTTTATCCAATCAAGACTACCAACAGGCTTTtgccaatacaaacaaaattctaaCGAACGATCAGAACTCCTTGGAGTCTGTCCTCGACGAGCCGCCGCCACATTTGATGGCTGAATCGCGTTCACGTTCAGTGCCACTACAATATTGCAACAGTCCCGCCTTCAATCAAACTGCAAACTATGCTGGCTTCTCGTCGACGTGTAACTCGGCCGCGCAGACCCCAGTGCCGCCACAATTTGCCGACTTTAGCGATCCCTCATCGATTTTGGATATATTCAGCGATGCGAGCCAAACGCATGGATCCTCAATCAAAATGGATGAATCCAGTGGCAGTCTACTATGCGGTTCTGTTGCCGATATCCTCCCTCCAGAGTATGGTCGCATTCCGGCGAATAGTTTTGGTGCAATAGTGTCACGTTCAGTGCCATCGACGCCATTGCCACTGCATAACATGATCGATCCGTTTTTaggcaacagcaacaacaatatCAAAAAACATCAACAGAAACAAGATAATTTTTCCAGTGCACAGAGTAAATATTCAACAAAAATGTACGACATCTCCAAGTCGATGCCTACGACGCCGATAACATCAAACACGGCCACGCCATCGTTTCGTTATAGTCCGGAATTCAATCGAGATTTTCTCATTAACGGCAACACCGTGGAAAGCACACCAGCCTATAGTCGAGCGCCATCTGTTGCCGGCGCAACAGCCCCCAGTCTATCTGATTCACTGCTCGACGATGCCCGCGAAGGCGGATCCAATTCACTCACCGACGGCATGGATGATTTGGGTAGTTTCGGCGAGGTTTCCGAGTCCATTATCGAGGCGGACATTCTGAATATGAATAACCTTTGA
- Protein Sequence
- MSDKNVHQLQWKQKNSDQSIYPSRNANVQSTSPIANQQPTAAASASIHPSLSGTASNGRYPIIGSQQQVVTSPASSTSSTNTSISLQQHFHTMQHLQQQQHHHQQQQQQQQQQQQQQQHHHPHQQNPHFELSKIMAMNSGALSRLELPPTLGNHPVSSAITENVLSLIGRSSIGNSSNTNSDDNKIPDEEKLRRVQAIVESGIGDHAKQQILQILDRISTLKPVERLLLYLRMPGETPESDPLRQPQNPLGTRSEINHTINWVRSHLEHDPKVSIPKQDVYNDYIAYCERLDIKPLSTADFGKVMKQVFPEIRPRRLGTRGHSRYCYAAMRKTTKLTPPQLPTIGGRIVDTMSSCEIECDPDAESWNTVRTWAEGLLNAKFDSLKDLADHIGKNEYLGGGAGSSRVLLQKKLLQRDAKEKRVYADSGPLKKRRKKKRKGSTSSESSSTTQHASLNEPAQSNEDILLGVQTIKQEILDSPNSLAQMHLNLPPTPYDTQMHGHHQLLPMNLASTESERSKTLGGLLPINSPVAKNLSKTIADLPPSVSLLPIDPQTAQLASVKEEIINDEYNPQNVICKKVRRAHLTKGILPTNNPPSSTITTAEAMPAVPHVELSPADVSNYPMGPPAQITTTAMESAKLASQVRARKLRLLQAHNEMYQTYDAQQQQQQQANIQQSQPLMDNVEITEDKDVVLPENLGLPRERVISICNMDKHELDDYLNANDEDNSQDQEAELIQYFQTGDAENNNNNNNNKATLQQQQHHQHHQQQQQPIDANNPTLAEYNSNSAFQVNNNNNSNKKKSMIGPAGGCYTRDRDDITQLRNYLHQNFNKDSNETMGALTAATATLNQRANVQGQKFQPNGNHYIVPGVYNEGSASASLAIMSQKHLNETASPAISAAAAASLSITPTTTTTSVSNATLRVNHSILPVDDYTPVPNNMRATQKRKINLNAMVPAPSTTQRRKNCTFFPISPNINLTNTTTNNSNSSSVSCASSMSVTTTNTNLFASPRLTASLVRTKPTLHKQQSLPAADKTTIASANDPMIGANRNNRNYSTITSASAPPSPSILQDTMMFGKNYNPANPMSGYNPLLSNQDYQQAFANTNKILTNDQNSLESVLDEPPPHLMAESRSRSVPLQYCNSPAFNQTANYAGFSSTCNSAAQTPVPPQFADFSDPSSILDIFSDASQTHGSSIKMDESSGSLLCGSVADILPPEYGRIPANSFGAIVSRSVPSTPLPLHNMIDPFLGNSNNNIKKHQQKQDNFSSAQSKYSTKMYDISKSMPTTPITSNTATPSFRYSPEFNRDFLINGNTVESTPAYSRAPSVAGATAPSLSDSLLDDAREGGSNSLTDGMDDLGSFGEVSESIIEADILNMNNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00724509;
- 90% Identity
- iTF_00310751;
- 80% Identity
- -