Cscu021976.1
Basic Information
- Insect
- Cheilosia scutellata
- Gene Symbol
- ZFX
- Assembly
- GCA_955612985.1
- Location
- OY015313.1:77827890-77832632[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.00051 5.3 8.0 0.1 14 45 47 78 43 82 0.85 2 7 5.4e-05 0.55 11.2 0.2 21 51 82 112 80 114 0.91 3 7 0.00045 4.6 8.2 0.0 21 45 139 163 131 168 0.90 4 7 0.00017 1.7 9.6 0.1 26 54 172 199 168 199 0.89 5 7 0.0078 81 4.2 0.1 26 48 200 222 192 228 0.86 6 7 0.011 1.1e+02 3.8 0.1 21 45 277 301 271 310 0.84 7 7 0.2 2.1e+03 -0.3 0.3 21 49 305 334 297 337 0.76
Sequence Information
- Coding Sequence
- ATGAATCAAAGTGTCGACGTGAAAAAGTTCGACTCTGAAGACGACGCAAGTCGTTCCCTAAGGGACAGTGGCATATCCATTGGCGAGGCATTTTCTGAAAATGAACCAGATGTCAAGACAAGCATATCGTCGAATAAGAAGAAGAAGGTACGAAAAAATGCAGCCAGAAGCAAGGACTGCCACATCTGTGTGAGGACGTTTAAAAACGGCACTGATCTGCGACGCCACCTTCTTATTCATACCAATGAGAAGCCTCACGAATGCGAGATATGCAAGAAATCTTATCGCCAAGAAGTCAATTTGAATAATCACATCATAATGGTGCACACGAACAAGAGAGATTTCAAGTGCCAGTTCTGCAGGAAGCCATTCGGACTAAAAACGCAGCTAAAACATCATTTGCGAATCCATACTGGAGAGAAACCCTATTCGTGTCCTATATGTGAAATGAGATTTGCCCAAGGTGGACAACTTGAAAAGCATATGGATACCCATGGGCGACGTGAAAAAAAGTGCTGCGAACTTTGTTTTACCAAATTTACAAGTGTACGCAATTTGAGGATACATATGGAACGTCACGAACAGGGGCCGGGGATTGTTTGTCACATATGCAGCAAAATATTCCAGAACGATCTTGTTTTGAAGTCTCATCTAAAATTGAACCATGGCAAAGTAAAGCCTGAATGTCAGATTTGTGAGTTGACGGTTGAAGGCGATATGCATGCTcatatgaaaactcattttcCAAATAAGCCCGTTGAGTGTGAGTTTTGCAATGCTAGATTTAGCTCCAAAGCTCAGTATTCAATTCACAAGAGGACACATACAGGAGAGAAACCATATCAGTGCAGGGTTTGCTGGCAAAGCTTTGGTCATAAAAACGTTCTTAAGCGGCACGTACGAAAACACACCGGAGAAAAGCCGTTCCAATGCGTCCTATGTAATTCAACAGCTTTCTCTCAACTGTGTCACCTAAAAACCCATATGCGAACAATTCATTATAAAGATAAAACATATGTATGTGAAGGATGCAAGGAGTCCTTCAAAGTTATGTTCCAACTCGAAAGGCACAAAGAGTTTTGTGACAAAACTGATCCACCAACTGAGTTTGATGATTTTGAACGTGAAAAACGGCGAAAAGATGCCCAGTTACTCACTCGTCTGAGATATCTTATAGCAGTGCTTTTGAAAAAGATATCGACGGAAGAGAAACTCTCTGAACTGGGCTTCGACAAACGACTAATAGACCATGTACTAATTGCCTCGTTGAAAGTGGCAAATCGAAAGTGCTATCAAAGCAAGAAAATGGATGAGCTCGATCGAATGAAATTAAATATACAGGAATTTTTAGAATGGATTGTTCCTGCAAATATATTAGATGTATTCAAAAAGGATTGCGAATCCATTGAGATTATCTTAGATATGATAGTAACAATGTATTTGAAGGAAAAAATAGTCATATAG
- Protein Sequence
- MNQSVDVKKFDSEDDASRSLRDSGISIGEAFSENEPDVKTSISSNKKKKVRKNAARSKDCHICVRTFKNGTDLRRHLLIHTNEKPHECEICKKSYRQEVNLNNHIIMVHTNKRDFKCQFCRKPFGLKTQLKHHLRIHTGEKPYSCPICEMRFAQGGQLEKHMDTHGRREKKCCELCFTKFTSVRNLRIHMERHEQGPGIVCHICSKIFQNDLVLKSHLKLNHGKVKPECQICELTVEGDMHAHMKTHFPNKPVECEFCNARFSSKAQYSIHKRTHTGEKPYQCRVCWQSFGHKNVLKRHVRKHTGEKPFQCVLCNSTAFSQLCHLKTHMRTIHYKDKTYVCEGCKESFKVMFQLERHKEFCDKTDPPTEFDDFEREKRRKDAQLLTRLRYLIAVLLKKISTEEKLSELGFDKRLIDHVLIASLKVANRKCYQSKKMDELDRMKLNIQEFLEWIVPANILDVFKKDCESIEIILDMIVTMYLKEKIVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00312052;
- 90% Identity
- iTF_00312903;
- 80% Identity
- iTF_00312903;