Cscu025177.1
Basic Information
- Insect
- Cheilosia scutellata
- Gene Symbol
- retn
- Assembly
- GCA_955612985.1
- Location
- OY015314.1:30393459-30459650[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.9 3.5e+03 -0.8 0.0 41 65 102 127 97 137 0.76 2 2 2.9e-26 1.1e-22 81.0 0.0 2 89 271 356 270 356 0.96
Sequence Information
- Coding Sequence
- ATGACACGCAATTGTGTCGCAGCACGCGTGCCCGTGTTGTACAAATCAAACTGCGGCGATCCAATTGCGTTTTGCCCCATTCAGTCAAACGACGAACATTCTGAGGACGACATAAGAGACTGCGAGTCAGTTGATGACGAGAATACCAGCCGATTAAACGCGTCGATGTCCAACGGCATGGCCATGGACTATGGGGGAATTGGCGGAGCCAGGAGTCCAGAACAACACAGCGCAGAAATTCAAATGAGTCACCATCATGCACAGTTCGCCACAAACCATCCGCTGGGAGCACTGGGCAATTTCATGAGTATGGGCGGTTTGCACAGCATCCCCAATCTGCAGCAGCAGCACAACGACGTGCTGGAAAAGCTGAAAATGCAGGTCCGCGACATGAAAGTCGGCCTAATGGACCAGGAATATCCACCACATGCAAACTTTGGCTCAAATGTCATTCCAACCCCCATCAATACAGCGTTCACAATCCCGTCAACTTCTCATACCTCGTTTGGTCACTCCCCGCAGAATCTCTCGCAGCCATCACCGCAGCCGCAGCAAACCTTGCTATCAACGcaccaacagcagcaacaacagcatcaGCAACAGTCGCAGTCACAAACGAGTTCCCAATCGATGCCGAATGGTTTCTCGTTCACATCACCCTCAGCCCCAAGCACAAAAGACGtGAATCCTGCGTCCAACTCATCAACATCCAGCGAAACATCTAACTCATCGCAGCAGAATAATGGATGGAGTTTTGAAGAGCAGTACAAACAAGTTCGACAGctctatgaaataaatgatgACCCTAAGCGCAAGGAGTTTCTCGATGACTTGTTTTCCTTCATGCAGAAGCGTGGTACGCCCATAAATCGCTTGCCCATCATGGCGAAATCGGTGCTCGACCTGTACGAGCTGTACAATTTGGTTATAGCGAGGGGCGGTCTCGTCGACGTGATCAACAAGAAGCTGTGGCAGGAAATCATAAAAGGACTGCATTTGCCGTCGAGCATAACCAGCGCAGCGTTTACCTTGCGCACGCAGTACATGAAATATTTGTATCCATACGAATGTGAAAAGAAGAACTTGAGCTCACCCGCTGAACTTCAGGCTGCGATCGATGGTAATCGCCGAGAGGGACGTCGTTCCAGCTATGGTCAATTTGAGGCTATGCACAACCAAATGCAGATGCCTCAAATGGGAAGATCAAATCTTCCCGGTGCAATGCAACAAATGTCTCCACTTGCCCTGGTCACCCATGGCAATCCACAAGCGGCTGCAGCAGCCGCACATCACAGACTGATGGCACCATCATTTGGTCAGGTACCCAATTTGGTACAACATGAAATCGAGCAACGCATGATGGAATATATAAAGTTGATTCAGACGAAAAAGGAACAACCCCGCCCCAGATCCCAGAGTCCAGAGACAACCACTCGCGAAGCGTTAAATGCCCTCGAAATGTCGCGTGTCGCCTTGTGGTCGATGTATCACAACAACACAAGTCCACCAGCATCGGTGAATACTTCACCACAGGGAGTCGAACCACAACGcGAGGCACTCAACCTTTCGGACTCACCACCGAATATCCTAATCAAACGTGAGCGTGAACGTGACCCTTCGGAGTTGAGTGCAATCTCAGATAGAGAAGATTTCAATCAACCACCACCGGCGAAGCGAGGGTTTccaacaaatatgtatatacctcCTGTTCGGAGTAGTTTTCACGAGGACCATGATATCGAAGATACAGACAATTCCACAGCTAATACCTCACATGAACACGAAGAGTTGCACCATCATGACATGGAAATGAAGCCACCTGCGGAAAGGAATAATCAACATTCACCGTTGATGCTGTCGCCACCAAAGAAACTGAATTTGAGTTTTAACGGAAATGACAATGTTAGCACTCAACATAATCGGCTGCAGGAAGAACCAGAGAAGATGGCTCAACATGACATCACCAATACGGAGTTGACACTGCTCTCGGGGATGCAGTTTAAGTTGTCAAGGAAATCTACCGGCGCTAATGGGGAACAGCAGCTTGTGGTTAATCTAGAACTGAACGGAGTCAATTACGAGGGTGTCCTGATTGCAAGCCCTACCACCGCGTCAACTCGCAGCACAGTCGCTTCGACAAATCCATCAGCAGCATCGCCCGCAGCAGCCCTTGTGGTTACAAATGGACCAAACGATGTCCAAAAGAAAACACGGTTGGACGACAGACCATTGTCACTCATACAACCATAA
- Protein Sequence
- MTRNCVAARVPVLYKSNCGDPIAFCPIQSNDEHSEDDIRDCESVDDENTSRLNASMSNGMAMDYGGIGGARSPEQHSAEIQMSHHHAQFATNHPLGALGNFMSMGGLHSIPNLQQQHNDVLEKLKMQVRDMKVGLMDQEYPPHANFGSNVIPTPINTAFTIPSTSHTSFGHSPQNLSQPSPQPQQTLLSTHQQQQQQHQQQSQSQTSSQSMPNGFSFTSPSAPSTKDVNPASNSSTSSETSNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSSPAELQAAIDGNRREGRRSSYGQFEAMHNQMQMPQMGRSNLPGAMQQMSPLALVTHGNPQAAAAAAHHRLMAPSFGQVPNLVQHEIEQRMMEYIKLIQTKKEQPRPRSQSPETTTREALNALEMSRVALWSMYHNNTSPPASVNTSPQGVEPQREALNLSDSPPNILIKRERERDPSELSAISDREDFNQPPPAKRGFPTNMYIPPVRSSFHEDHDIEDTDNSTANTSHEHEELHHHDMEMKPPAERNNQHSPLMLSPPKKLNLSFNGNDNVSTQHNRLQEEPEKMAQHDITNTELTLLSGMQFKLSRKSTGANGEQQLVVNLELNGVNYEGVLIASPTTASTRSTVASTNPSAASPAAALVVTNGPNDVQKKTRLDDRPLSLIQP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00314926;
- 90% Identity
- iTF_00313225; iTF_00314926;
- 80% Identity
- -