Cscu015674.1
Basic Information
- Insect
- Cheilosia scutellata
- Gene Symbol
- rfx7.L
- Assembly
- GCA_955612985.1
- Location
- OY015312.1:108424488-108431920[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.7e-32 4.2e-28 98.5 0.0 3 78 256 331 254 332 0.97 2 3 0.16 2.4e+03 -0.0 0.4 22 44 651 673 641 674 0.89 3 3 2 3.1e+04 -3.6 0.0 24 41 1148 1165 1140 1169 0.82
Sequence Information
- Coding Sequence
- ATGTCCGACAAAAATGTACACCAATTGCAGTGGAAACAAAAGAACTCAGATCAATCGATATACCCCTCACGAAATGCGAACATTCAATCAACATCACCGATCGCTAATCAGCAGCCCACAGCTGCTGCCTCAGCTTCAATTCACCCATCACTTTCGGGGACGGCTTCGAATGGACGTTATCCGATAATTGGTAGTCAGCAGCAGGTCGTAACCTCTCCAGCATCATCAATATCATCTACAAATACTTCAATTGGACTGCAACAACATTTTCATACTATGCAACAccttcaacaacaacaacaacaacaacaccatcaccaacagcagcagcagcaacaacaacaacagcatcatCATCCTCATCAACAGAATCCGCATTTTGAACTATCAAAGATTATGGCTATGAACTCGGGTGCATTGTCCAGATTGGAGTTACCTCCAACTTTGGGTAATCACCCTGTTTCGAGTGCGATAACAGAGAATGTCTTAAGTCTGATTGGGAGGTCTAGCATTGGGAATAGTTCTAATACGAATAGCGATGACAACAAAATTCCAGATGAAGAAAAACTACGAAGAGTTCAAGCTATTGTTGAGTCTGGCATTGGCGACCATGCCAAACAACAGATTCTGCAAATCCTCGACCGAATTTCTACACTCAAGCCCGTTGAGCGATTACTTTTGTACCTTCGGATGCCGGGAGAAACACCAGAATCAGATCCCTTACGGCAGCCACAAAATCCACTAGGAACTAGATCTGAAATAAATCACACAATCAATTGGGTGCGTTCACATTTGGAACACGATCCAAAGGTTTCCATTCCAAAGCAAGATGTTTACAATGATTATATagcATACTGTGAACGTTTGGATATAAAACCTCTGTCGACAGCAGACTTTGGCAAAGTGATGAAGCAGGTGTTTCCCGAAATTCGTCCTAGACGTTTGGGCACACGTGGTCATTCACGTTATTGTTATGCGGCGATGAGAAAAACGACAAAGCTGACTCCACCACAGCTCCCAACGATTGGTGGACGAACTGTAGACACTATGAGTAGCTGTGAAATTGAATGCGACCCGGATGCAGAGTCATGGAACACTGTTCGCACCTGGGCCGAGGGACTGCTTAATGCTAAATTCGATAGCTTAAAGGATTTGGCGGATCACATTGGAAAGAATGAGTACCTAGGCGGTGGAGCAGGTAGCTCGCGAGTTTTACTCCAAAAGAAACTATTACAAAGAGACGCAAAAGAGAAGAGGGTTTATGCGGACTCGGGACCCCTTAAAAAGCGGCGAAAGAAAAAACGCAAAGGTTCGACATCCTCCGAATCGAGTAGCACAACACAACATGCTTCACTAAACGAACCAGCCCAATCCAATGAAGATATTCTCCTTGGCGTACAAACAATCAAACAAGAAATTCTAGATTCACCAAATTCACTAGCGCAGATGCATTTGCACCTACCTTCTACCCCCTATGATACGCAGATGCATGGCCATCAACTGCTTCCAATGAATTTAGCGAGCACAGAGAGCGAGCGCAGCAAGACCTTGGGTGGCCTGCTACCAATAAACAGTCCAGTGGCGAAAAATCTTTCAAAAACTATCGCAGACCTACCACCATCGGTGAGCCTGTTGCCAATCGATCCACAGACAGCACAACTAGCCTCTGTCAAAGAGGAGATAATCAACGACGAATACAATCCACAGAATGTGATATGCAAGAAGGTACGAAGGGCACACCTAACGAAGGGTATTCTACCCACAAACAACCCCCCATCTTCAACAATCACAACTGCTGAAGCGATGCCTGCAGTGCCACACGTCGAACTATCACCAGCCGATGTGAGCAACTACCCTATGGGACCACCAGCACAGATCACGACCACTGCAATGGAAAGTGCGAAGCTAGCCTCACAGGTACGCGCAAGAAAACTGCGATTACTGCAGGCTCACAACGAGATGTATCAGACATACGACgcacaacagcaacagcagcagcaggcTAACATACAACAGGCACAGCCTTTAATGGATAACGTTGAGATAACAGAGGACAAGGATGTTGTGCTGCCAGAAAACCTTGGCCTACCGCGTGAGCGTGTAATTAGTATTTGCAACATGGACAAACACGAGTTAGATGACTATTTGAATGCAAACGACGAAGACAACTCCCAGGATCAAGAAGCGGAATTGATTCAATATTTTCAGACGGGAGACGCTgagaacaacaataataacaacaacaacaacaaggcaacgctgcagcagcaacaacatcaccaacatcatcatcagcagcagcagcaacaacccATAGATGCGAATAACCCAACGTTGGCAGAGTATAACTCCAATTCGGCATTTCAAgttaacaacaataacaacagcaACAAGAAAAAATCAATGATTGGCCCAGCTGGCGGCTGTTACACAAGAGATCGTGACGACATCACACAGCTTCGTAATTATCTTCATCAGAATTTTAATAAAGATTCGAATGAGACAATGGGAGCACTCGCCGCAGCCACTGCTACACTCAATCAGCGAGCAAATGTCCAAGGACAGAAATTTCAGCCGAATGGAAATCATTACAACATGCCTGGCGTCTACAACGAAGGGTCCGCCTCAGCGTCTCTAGCAATCATGTCTCAAAAGCATCTAAACGAAACAGCATCACCATCGATAGCGATATCGGCCGCTGCAGCGGCATCATtatcaataacaacaacaaccacaacaacTTCTGTCAGCAACGCCACCCTAAGAGTAAACCATTCGATTTTACCTGTCGATGATTATACTCCCGTTCCAAACAATATGCGTGCAACGCAGAAGCGAAAAATCAATCTAAACGCAATGGTACCTGCTCCCAGTACAACGCAACGGCGAAAGAACTGCACTTTCTTTCCAATTTCGCCAAACATAAATCTTACCAATACTACAacaaacaacagcaacagctcATCTGTGTCCTGCGCCTCCTCCATGTCAGCGACGACGACTAATACAAATCTATTTGCTAGTCCAAGATTAACCGCCTCTTTAGTGCGTACCAAACCAACGCTGCATAAACAGCAATCGCTACCAGCGGCCGATAAAACTACCATCGCGTCCGCCAACGACCCAATGATAGGCGCTAATCGCAACAATAGAAATTACAGCACAATTACATCAGCATCGGCGCCACCTAGTCCTTCGATACTGCAAGACACTATGATGTTTGGCAAAAATTACAACACCGCCAATCCTATGAGTGGATATAATCCACTTTTATCCAATCAAGACTACCAACAGGCTTTTgccaatacaaacaaaattctaaCGAACGATCAGAACTCCTTGGAGTCTGTCCTCGATGAACCACCGCCACATTTGATGGCTGAATCGCGTTCACGTTCGGTGCCACTACAATATTGCAACAGTCCCGCCTTCAATCAAACTGCAAACTATGCTGGCTTCTCGTCGACATGTAACTCGGCCGCGCAGACCCCAGTGCCGCCACAATTTGCCGACTTTAGCGATCCCTCATCGATTTTGGATATATTCAGCGATGCGAGCCAAACGCATGGATCCTCAATCAAAATGGATGAATCCAGTGGCAGTCTACTATGCGGTTCTGTTGCCGATATCCTCCCTCCAGAATATGGTCGCATTCCGGCAAATAGTTTTGGTGCAATAGCGTCACGTTCAGTACCATCGACGCCATTGCCACTGCATAACATGATCGATCCGTTTTtaggcaacagcaacagcaacatcaaGAAACATCAACAGAAACAAGATAACTTTTCCAGTGCACAGAGCAAATATTCAACAAAAATGTACGACATCTCCAAGTCGATGCCTACGACGCCGATAACATCAAACACGGCCACGCCATCGTTTCGTTATAGTCCGGAATTCAATCGAGATTTTCTCATTAACGGCAACACCGTGGAAAGCACACCAGCCTATAGTCGAGCGCCATCTGTTGCCGGTGCAACAGCCCCCAGTCTATCTGATTCACTGCTCGACGATGCCCGCGAAGGTGGATCCAATTCACTCACCGACGGCATGGATGATTTGGGCAGTTTCGGCGAGGTTTCCGAGTCCATTATCGAGGCGGACATTCTGAATATGAATAACCTTTGA
- Protein Sequence
- MSDKNVHQLQWKQKNSDQSIYPSRNANIQSTSPIANQQPTAAASASIHPSLSGTASNGRYPIIGSQQQVVTSPASSISSTNTSIGLQQHFHTMQHLQQQQQQQHHHQQQQQQQQQQHHHPHQQNPHFELSKIMAMNSGALSRLELPPTLGNHPVSSAITENVLSLIGRSSIGNSSNTNSDDNKIPDEEKLRRVQAIVESGIGDHAKQQILQILDRISTLKPVERLLLYLRMPGETPESDPLRQPQNPLGTRSEINHTINWVRSHLEHDPKVSIPKQDVYNDYIAYCERLDIKPLSTADFGKVMKQVFPEIRPRRLGTRGHSRYCYAAMRKTTKLTPPQLPTIGGRTVDTMSSCEIECDPDAESWNTVRTWAEGLLNAKFDSLKDLADHIGKNEYLGGGAGSSRVLLQKKLLQRDAKEKRVYADSGPLKKRRKKKRKGSTSSESSSTTQHASLNEPAQSNEDILLGVQTIKQEILDSPNSLAQMHLHLPSTPYDTQMHGHQLLPMNLASTESERSKTLGGLLPINSPVAKNLSKTIADLPPSVSLLPIDPQTAQLASVKEEIINDEYNPQNVICKKVRRAHLTKGILPTNNPPSSTITTAEAMPAVPHVELSPADVSNYPMGPPAQITTTAMESAKLASQVRARKLRLLQAHNEMYQTYDAQQQQQQQANIQQAQPLMDNVEITEDKDVVLPENLGLPRERVISICNMDKHELDDYLNANDEDNSQDQEAELIQYFQTGDAENNNNNNNNNKATLQQQQHHQHHHQQQQQQPIDANNPTLAEYNSNSAFQVNNNNNSNKKKSMIGPAGGCYTRDRDDITQLRNYLHQNFNKDSNETMGALAAATATLNQRANVQGQKFQPNGNHYNMPGVYNEGSASASLAIMSQKHLNETASPSIAISAAAAASLSITTTTTTTSVSNATLRVNHSILPVDDYTPVPNNMRATQKRKINLNAMVPAPSTTQRRKNCTFFPISPNINLTNTTTNNSNSSSVSCASSMSATTTNTNLFASPRLTASLVRTKPTLHKQQSLPAADKTTIASANDPMIGANRNNRNYSTITSASAPPSPSILQDTMMFGKNYNTANPMSGYNPLLSNQDYQQAFANTNKILTNDQNSLESVLDEPPPHLMAESRSRSVPLQYCNSPAFNQTANYAGFSSTCNSAAQTPVPPQFADFSDPSSILDIFSDASQTHGSSIKMDESSGSLLCGSVADILPPEYGRIPANSFGAIASRSVPSTPLPLHNMIDPFLGNSNSNIKKHQQKQDNFSSAQSKYSTKMYDISKSMPTTPITSNTATPSFRYSPEFNRDFLINGNTVESTPAYSRAPSVAGATAPSLSDSLLDDAREGGSNSLTDGMDDLGSFGEVSESIIEADILNMNNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00724509;
- 90% Identity
- iTF_00310751;
- 80% Identity
- -