Cpag004912.1
Basic Information
- Insect
- Cheilosia pagana
- Gene Symbol
- -
- Assembly
- GCA_936435595.1
- Location
- CAKZFE010000016.1:199209-204754[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.00028 1.2 9.6 0.4 11 49 43 79 37 82 0.75 2 7 8.8e-05 0.38 11.2 0.2 21 51 79 109 77 111 0.91 3 7 7.3e-05 0.31 11.4 0.0 21 46 136 161 128 167 0.92 4 7 0.00055 2.3 8.6 0.1 26 54 169 196 164 196 0.90 5 7 0.34 1.5e+03 -0.3 0.0 26 48 197 219 195 224 0.85 6 7 0.016 69 3.9 0.1 21 45 274 298 265 306 0.83 7 7 0.52 2.2e+03 -0.9 0.2 21 48 302 331 298 334 0.68
Sequence Information
- Coding Sequence
- ATGAGTCAAAGCAGCGACGTGAACGACTCCAAGGAGGAGGTAAGCTGTTCCCTGGCGGACAGTGGCATATCAATCTGCGAGGTATTCTCTGAAAATAAACCCGATGTGAAGGAAGTCATATCGCCGGGTCAGAAGAAGGTTCGAAAGAATGCGGCTCGCAGCAAGCACTGTCACATTTGTGTAAGAACGTTTAAGAACGCCACTGATTTGCGACGCCACCTGCTAATCCATACGAATGAGAAGCCGCACGAATGCGAGATATGCAAGAAGTCGTATCGGCAGGAAGTGAACCTGAACAATCACATCATAATGGTGCACACCAACAAGCGGAATTTCAAGTGTCAGTTCTGCAGGAAACCATTCGGGCTGAAATCACAGCTGAAACACCATTTGCAGGTCCATTCTGGAGAGAAGCCCTATTTGTGCCCTATATGTGATATGACATTTGCCCAGGGCGGACAACTGGAAAAGCACTTGGAAACGCATGGAAAACGTGAGAAAAAGTGCTGCAAACTTTGCTTCACCAAGTTTACAAGTGAACGCAACCTGAGGATACACATGAAACGTCATGATCAGGGGCCTGGGGTTGTTTGTCAAATATGCAACAAGGTATTCAAGAACGACATCGTTTTGACAACCCATCGAAAAATGAACCATGGCAAGGTGAAGCCTGAGTGTCAGATTTGCGAGTTGATGGTGGACGGCGATATGCAGTCTCATATGAAAGCTCATTTTCCCAAGAAGCCCGTTGAGTGTGAATTCTGCGATGCTAGATTTGCCTCCAAGACGCAGTATGAAGTTCACAAGAGGACGCATACCAAAGAGAAACCGTTTCAGTGCAGGGTTTGCTGGCAAAGCTTCGGACATAAGAACGTTCTCAAACGGCACGTGCGGAAACACACCGGAGAGAAGCCGTACCAATGCGTCCTCTGTAGCTCGACAACAACTTTCTCTCAGCTTTGTCACTTAAAGACCCACATGAGAACCATTCATTATAAAGATAAAACCTATGTTTGCGAAGGATGCAAAGAGTCCTTCAAAGTAATGTTCCAACTCGAGAGGCACAAAGAATTTTGCGACAAAACCGATCCCCCGACTGAGTTTGATGATTTCGAACGCGAAAAACGCCGTCAAGATGCCATGTTACTCACGCGTCTGCGATACCTTGTGGCAGTGCTCCTCAAAACGATATCCACGGAAGAGAAACTCTCCGAGCTGGGCTTCGACAAACGACTCATAGACCATGTACTAATTGCCTCGCTAAAAGTAGCAAAGCGAAAGTGCTACCAAAGCAAGAAAATGGATGAACTCGATCGAATGAAATTGAATATACAGGCGTTCCTCGAATGGATTGTTCCTGCAAATGTATTAGATGTATTCAAAAAGGATTGCGAATCCATTGAGATTATCTTGGACATGATCGTGACAATGAATTTAAAGGAACCGATAATTATATAG
- Protein Sequence
- MSQSSDVNDSKEEVSCSLADSGISICEVFSENKPDVKEVISPGQKKVRKNAARSKHCHICVRTFKNATDLRRHLLIHTNEKPHECEICKKSYRQEVNLNNHIIMVHTNKRNFKCQFCRKPFGLKSQLKHHLQVHSGEKPYLCPICDMTFAQGGQLEKHLETHGKREKKCCKLCFTKFTSERNLRIHMKRHDQGPGVVCQICNKVFKNDIVLTTHRKMNHGKVKPECQICELMVDGDMQSHMKAHFPKKPVECEFCDARFASKTQYEVHKRTHTKEKPFQCRVCWQSFGHKNVLKRHVRKHTGEKPYQCVLCSSTTTFSQLCHLKTHMRTIHYKDKTYVCEGCKESFKVMFQLERHKEFCDKTDPPTEFDDFEREKRRQDAMLLTRLRYLVAVLLKTISTEEKLSELGFDKRLIDHVLIASLKVAKRKCYQSKKMDELDRMKLNIQAFLEWIVPANVLDVFKKDCESIEIILDMIVTMNLKEPIII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00312052;
- 90% Identity
- iTF_00312052;
- 80% Identity
- iTF_00312052;