Cnem010713.1
Basic Information
- Insect
- Chalcosyrphus nemorum
- Gene Symbol
- -
- Assembly
- GCA_949716465.1
- Location
- OX454333.1:77503731-77505230[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.089 5.9e+02 0.8 0.1 22 43 217 238 210 243 0.79 2 8 0.001 6.9 7.0 0.1 21 49 244 271 238 274 0.86 3 8 0.021 1.4e+02 2.9 0.2 21 45 299 323 278 326 0.86 4 8 0.00024 1.6 9.1 0.1 21 45 327 351 323 360 0.89 5 8 0.0021 14 6.1 0.1 18 47 379 409 369 415 0.81 6 8 0.18 1.2e+03 -0.1 0.1 21 46 411 436 407 442 0.76 7 8 0.0012 7.9 6.8 0.1 23 45 441 463 437 467 0.89 8 8 0.0027 18 5.7 0.2 21 47 467 493 463 496 0.89
Sequence Information
- Coding Sequence
- ATGTCTGGCGAATTGACACAAATCGAATTCTCCCAAATGGTCAAGGACAGCAATTGTACCTTCGCCGATTGGccagatgatgatgacgaggaggaggaagacGAGCATATGACTGGAGTGCTCCTCACAGAGGACATGATCAAGCAAGAGCCAGAATTTATAATTGGCTCCGACGACATCCGAGAGGAGCAAAAGATTCGtgctttcctaaaaaaatcCACAATCGAGGACGAGGAGCGTCAACAGCTGAATTGGCTCACTTGTATGGTTTGCGATGAACGCTTCTTGTCGACCAAAGAGTTGTCTCTCCATGTACAGGAACATGCCAAGGCTGCAATGAAAGAGGAAGAGAAGGATATAAAGCCCCCAAAAGAGCTGACAAACCGTCAGGCGCCAAAGACACCTTACACGGGTTTTTCCAGGCAAGAACTCTTCCAAGACTATATCAATATCGACGTGGAGCTAGATGGAAAGCCAACGTACAGATGCAAACTATGCCCCAACAAAGTATTCGCGCGTCAAGTCTCGATCCGAAATCACATGCGGATTCATGAGAACCCAACGTACAAGGAACGCTCATGCCACGTCTGCCACAAGACATTCCTGCGCCGGGACACGCTCCTGGTTCACTTGCGGACACACAGCAATGAGAGGAAGTACAAATGCAACATCTGTGATGCCGCCTTCACACATTCCAGCTCACTAGTCTCCCACAAACGCATTCACACCGGCGAAAAGCCCTACAGCTGTTCAATTTGCGAGAAAACCTTTAGGGAATCGGGCCAACTAACAGCTCATAAGAAAATCCACTTCGAGAAGCTTCTGCAATGTCCCAAATGCGATAAGAAGTTTACCTCAAATAAGACACTTCGCGTCCACTGCCGTACACATACGGATGAGCGTCCGTACGCGTGTACCTTCTGTGGCAAGATGTTCCGTTGCACTACAAGTCTGACAACTCATCTGCGAGTCCACACTGGCGAGAAACCATACAAATGTGAGATTTGCTCCTACGCCACCAAACAGTCGGGATACCTTCGAACTCACATGCGAACGCATACTGGAGAGCGCCCATACAAATGCACCTACTGCGAAAAAGCTTTCTCCGAGAAGAAACGACTTGTGACCCATACCCGAAGTCACACTGGCGAACGACCTTACAAATGCATCTATTGCGATGCGGCATTCGCCCGAAACGACAACCTCAAATACCATCTCCGAACGCATACCGGTGAAAAGCCCTACGAATGTCCCGATTGTGGCAAACGCTTCGCTCAGGGAACAGCGTTAAGCATCCATCAAAAAATCCATACCGGAGTTAAGCCGTATTCTTGCCCACATTGTGCGATGAAGTTTAGACAGAGCGGAACTCTGGTCACTCATCTACTGATGCATACGAATGAACGGCCGTTCAAGTGTGATCTATGCGAGAGGGGTTTCAGACAAAGAGCACTTTTAAAGCGACATGTCACCAGTGCCCATGGAAATATGGTGAACTAG
- Protein Sequence
- MSGELTQIEFSQMVKDSNCTFADWPDDDDEEEEDEHMTGVLLTEDMIKQEPEFIIGSDDIREEQKIRAFLKKSTIEDEERQQLNWLTCMVCDERFLSTKELSLHVQEHAKAAMKEEEKDIKPPKELTNRQAPKTPYTGFSRQELFQDYINIDVELDGKPTYRCKLCPNKVFARQVSIRNHMRIHENPTYKERSCHVCHKTFLRRDTLLVHLRTHSNERKYKCNICDAAFTHSSSLVSHKRIHTGEKPYSCSICEKTFRESGQLTAHKKIHFEKLLQCPKCDKKFTSNKTLRVHCRTHTDERPYACTFCGKMFRCTTSLTTHLRVHTGEKPYKCEICSYATKQSGYLRTHMRTHTGERPYKCTYCEKAFSEKKRLVTHTRSHTGERPYKCIYCDAAFARNDNLKYHLRTHTGEKPYECPDCGKRFAQGTALSIHQKIHTGVKPYSCPHCAMKFRQSGTLVTHLLMHTNERPFKCDLCERGFRQRALLKRHVTSAHGNMVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01395957;
- 90% Identity
- iTF_00241666;
- 80% Identity
- iTF_00310452;