Cova010123.1
Basic Information
- Insect
- Chaetogeoica ovagalla
- Gene Symbol
- -
- Assembly
- GCA_032441825.1
- Location
- CM063733.1:8074236-8074685[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.044 4.9e+02 1.3 0.1 21 42 36 57 28 60 0.77 2 4 0.00029 3.3 8.2 0.1 13 43 57 86 47 91 0.80 3 4 1.4e-05 0.16 12.4 0.1 20 49 91 120 85 123 0.85 4 4 6.1e-05 0.7 10.4 0.0 21 45 120 144 116 149 0.89
Sequence Information
- Coding Sequence
- ATGACCGAGAAGAGAACAAACGTCGTGGAACGAAATTCTTGTAACGtttgtttgaaaacgtttactTATAGAAGCAAACTGACAAACCATATGGCAACGCATACCGGAGAAAACCCTTATTCATGTGAGGTTTGCATGAAATCCTTTGCTGAGAATTCGAATTCGACGAAACACGCTAGGACCCATAGCGGAGAAAAGCCATATTCATGTGAAGTTTGCATGAAATCCTTTGCTCAGAGTTCGACTTTGACGACGCACGCTAGGACGCACAACGGAGAAAAGCCGTATACGTGTGACGTCTGTACGAAATCATTCGCACAGAATAGCACTTTGACAAGGCATATGAGGATTCATAGCGGagaaaaaccgtatttttgtaacatttgCGTGAAGCCATTTGCGGACAGTGGAAATATGAAGAGACACATGAAAACGCACACTGCGCAGTGA
- Protein Sequence
- MTEKRTNVVERNSCNVCLKTFTYRSKLTNHMATHTGENPYSCEVCMKSFAENSNSTKHARTHSGEKPYSCEVCMKSFAQSSTLTTHARTHNGEKPYTCDVCTKSFAQNSTLTRHMRIHSGEKPYFCNICVKPFADSGNMKRHMKTHTAQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00309022;
- 90% Identity
- iTF_00309022;
- 80% Identity
- iTF_00309022;