Cova010971.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chaetogeoica ovagalla
Gene Symbol
Hr39
Assembly
GCA_032441825.1
Location
CM063734.1:9295673-9300525[-]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 4 2.3e+04 -7.7 16.1 52 156 196 295 107 327 0.51
2 3 1.3e-07 0.00072 19.4 0.1 1 69 418 488 418 521 0.73
3 3 5e-71 2.8e-67 228.2 0.1 205 408 532 730 513 730 0.96

Sequence Information

Coding Sequence
ATGGCCAACAGCGATACCAGAATGTGGGGTCACAGCGTGCAGGTGTCGTCCGGTCCGGTCACCGTGACGTCGATCAATCTGATCGCTCCCCGTTTGCCTGCAAACGCGCAGATCACGACGATAAAAGAGGAATCGCATGACAAGGacaacgcggcggcggcggcggctcaGGCGAAGGAAGACGCCGTCGACGAAGTCGGTTCCGAGTGCGACCGCGAGGTGagcaaaatcgatttttccggCGTTACGATGAGGAGTAAGAAAATGAGAGCGGTCGAGGAAAACACGCCGCGGCCGATGTCTTGGGAAGGAGAATTGTCCGACACGGAAATGAAACAAGAAGAAGATCCGGCGACGGCGAACGTTCCGAGTGTCGCAGGAAATCGGAATTACGCGTTGCCGCGAAACGACGACGCGAACGATCGGCAACAGTCTTCCGTCAAACGAATTGTCTACAACGATAATAACCTGGTCGACCGAGTGATGGAGCACGTCAAGAGCAAAGTGACATCGTCAAATAACGAAATTCCGTTGTTAGTCGATAAATTGTTAGGCGGCGGTGGTTACAGTCCGTTACTGCAACACAGGACTAACGGAATGAAACAGCAGCCGTCGtcacaacaacagcagcagcagcaacacaTTCCACCGACTCAGAGTCCGGACTCGGCCATACACTCTTGTTGTTCGCCCGCACAGTCGCCGATCACTTCCAGACACAATCCTCCGTCGTCTTCGGGGTTTTCGTCCCCGTCCACTTTCACGCCGTCATCGTTGTCCAGAAATAATAGCGATGCGTCCCAATACGGCGGATCGCAACACAGTTCTTGTTACAGTCAAagTTATTCCTCGGTATCCGTTTCGCCTACACAGTTTTCCCCGACACAGTCACCGATTCAACCTAGACACGTACAGAGGAATTTTCATGAATATACCGTGGCAGAGGAGACGAATGGATACGAAGAGAAAATGTCTATGTCGGAAATTGGCCAACAGCATGGTATCACGTCTGGCATTTCTCGACAACAACTGATCAACagtCCTTGTCCGATCTGCGGCGATAAGATTTCTGGTTTTCATTATGGAATATTTTCGTGCGAAAGCTGCAAaggatttttcaaacgaaccGTGCAAAATCACAAGAATTACGTGTGTCTGCATGGTTCAGCTTGTTTGATTACAATATCTACACGCAAAAAGTGTCCGGCTTGCCGTTTTGACAAGTGCTTGAATATGGGTATGAAACTCGAAGCGATCAGAGTGGATAGAACAAGAGGTGGACGTAGCACGTATCCGTTCACTTACACTATACCGCCGTCCAACATTCAGCCACAACACAATAGTGGACAACATTCTGGAATGACCAATAATACTGTTGACAATAAAGTCAAGCAGGAAGAACGTGTGTGCAGGTCGCCACCGCCCCAAGAAATGGCCAGTCTGATCCCTCAATTGTTGCAAgaaATAATGGAAGTAGAACATTTATGGACTTACAATGAAGGCTCATTTGAATCATCGAGTGCGAGTGGCAGTTCTACGAACCATTGTGGTGGAGCCAAAGAAATCGCTAAGAGTCGTTTAATGGCGGAAAATTCGGGAACCGATTTTCTTTCTAATTTATGCAACATTGCTGACCATCGGCTATACAAAATAGTGAAATGGTGCAAATCATTACcgctatttaaaaacatttcgatcgATGATCAGATATCGTTATTGATAAACGCTTGGTGTGAGCTACTGTTGTTTAGTTGTTGTTATCGGTCAGTTAGTAGTCCTGGTGAAATACGTGTTAGCTTGGGAAAGTCTATTTCTTTAGATCAAGCTAGAGAATTAGGCTTAGCACCTTGTATTGAGCGCATGTTGAATTTTACTCAACATCTGAGACGTTTGAGAGTGGACAGATATGAATACGTCGCCATGAAAGTTATTGTGCTATTGTCGTCAgatacgAATGACTTGAAAGAACCGGAAAAAGTTCGGGCATCTCAAGAAAAAGCGTTACACGCATTACAACAGTATACTGTGGCACATTATCCAGACATGCCATCCAAATTTGGAGAATTGTTGTTAAGAATACCCGATTTACAGCGAACTTGCCagGTTGGAAAAGAAATGTTGTCGATAAAGAGTAAAGAAGGAGAAGGACAAAGTTTCAATCTCTTAATGGAGTTATTAAGAGGCGATcattaa
Protein Sequence
MANSDTRMWGHSVQVSSGPVTVTSINLIAPRLPANAQITTIKEESHDKDNAAAAAAQAKEDAVDEVGSECDREVSKIDFSGVTMRSKKMRAVEENTPRPMSWEGELSDTEMKQEEDPATANVPSVAGNRNYALPRNDDANDRQQSSVKRIVYNDNNLVDRVMEHVKSKVTSSNNEIPLLVDKLLGGGGYSPLLQHRTNGMKQQPSSQQQQQQQHIPPTQSPDSAIHSCCSPAQSPITSRHNPPSSSGFSSPSTFTPSSLSRNNSDASQYGGSQHSSCYSQSYSSVSVSPTQFSPTQSPIQPRHVQRNFHEYTVAEETNGYEEKMSMSEIGQQHGITSGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNHKNYVCLHGSACLITISTRKKCPACRFDKCLNMGMKLEAIRVDRTRGGRSTYPFTYTIPPSNIQPQHNSGQHSGMTNNTVDNKVKQEERVCRSPPPQEMASLIPQLLQEIMEVEHLWTYNEGSFESSSASGSSTNHCGGAKEIAKSRLMAENSGTDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQISLLINAWCELLLFSCCYRSVSSPGEIRVSLGKSISLDQARELGLAPCIERMLNFTQHLRRLRVDRYEYVAMKVIVLLSSDTNDLKEPEKVRASQEKALHALQQYTVAHYPDMPSKFGELLLRIPDLQRTCQVGKEMLSIKSKEGEGQSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00340610;
90% Identity
iTF_00941576;
80% Identity
iTF_00308914; iTF_00308864;