Cova017490.1
Basic Information
- Insect
- Chaetogeoica ovagalla
- Gene Symbol
- lrrfip2
- Assembly
- GCA_032441825.1
- Location
- CM063745.1:846668-850280[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.6e-77 2.2e-72 244.3 22.4 1 300 32 316 32 316 0.89 2 2 0.012 2.8e+02 0.9 2.3 120 171 314 365 313 376 0.80
Sequence Information
- Coding Sequence
- atggatAATTTAAGTTCAATGACTAGTGGTCGTCGAAGATTTCAAACTTCTCACTACACAGAAGATTGTACATTTGATCGAATTGCAAAAGATgcagAATCTCGTTTAATTGCAAAGCGACAGGCTCGCACTGAAGCTCGAGAAATTCGTATGCAAGAAATTGAACGccaacaaaaagaaattgagGGAAATGcagtttttgatatttatacacCTTTAGatgTAGATCGAGGATGTCATACGCCTAGCTCTAAATCCAGTTTTACACCAAATTCAACAAACAGTTATCAATCTAATCGACACAATTCAGTTGGTTCTTTGGATGAatcacattataattttcgagattttaagATGGAATTAAAAGAACTAGaagaaaaatttcgaaaatctaTGGTTCAAAATGATCAACTCCATAATGAAAAATcgcttataatatacacagtcGAATTATATAAAGATAAATTTACTGATATCGAGGAAGAACTAATccatattaataagaaaaacaaagaatattttagagaaaacgaaaatctaaaacgtttattagCTACTCAAAAATCAGAATCTATTGCTTTAAAAAATGAACTGGACGAACGAGATAGGCTTATTCGAgAAAAAGGTCTTGTTATTATAAGcacaaatgaaaaaagtcaaattaataataaaattaaacgtaccTTAGTTTCTGTTGAAAGTGCTAAATTATTACAAGATACTGGCGAAGAAGATTCTTtagatataagactcaaaaaaattaatgatgaaCGTAAtggttatattaataaaattaacagtcTCAAATTAGAATTGCAAGAAGCCAAAAATCATATCGGTGAAGAATATTCAGACTGCGATAATTTCGAGGATGCCcaaaaaGAAACGAATAAAGTATATGGcgattataaattcaaattgcaGAAAgctgaacaaaatatttctacattacaagcaaatattGCTAGACTTGAAAGTCAAGTAATTAGATATAAAACGGCTTCGGATTTATCTGAAAAGGAGGGATCCGaacttaaaattgaaaaacgaaaattacaacgagagcTTCGAGAATCTTTATCAAAAATTGAAGAATTAGAAACATCCAATATGCATTTACTTAAacgttttgataaattaaaaaatgcgaAATCAAGCTTATTAAAAGATTTATGA
- Protein Sequence
- MDNLSSMTSGRRRFQTSHYTEDCTFDRIAKDAESRLIAKRQARTEAREIRMQEIERQQKEIEGNAVFDIYTPLDVDRGCHTPSSKSSFTPNSTNSYQSNRHNSVGSLDESHYNFRDFKMELKELEEKFRKSMVQNDQLHNEKSLIIYTVELYKDKFTDIEEELIHINKKNKEYFRENENLKRLLATQKSESIALKNELDERDRLIREKGLVIISTNEKSQINNKIKRTLVSVESAKLLQDTGEEDSLDIRLKKINDERNGYINKINSLKLELQEAKNHIGEEYSDCDNFEDAQKETNKVYGDYKFKLQKAEQNISTLQANIARLESQVIRYKTASDLSEKEGSELKIEKRKLQRELRESLSKIEELETSNMHLLKRFDKLKNAKSSLLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -