Basic Information

Insect: Chaetogeoica ovagalla
Gene Symbol: UBTF
Assembly: GCA_032441825.1
Location: CM063725.1:3535392-3537068[+]

Transcription Factor Domain

TF Family: HMG
Domain: HMG_box domain
PFAM: PF00505
TF Group: Other Alpha-Helix Group
Description: High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 9.9e-19 6.8e-16 58.8 2.7 2 64 148 210 147 214 0.96

2 4 1.6e-06 0.0011 19.7 2.0 27 65 245 283 223 285 0.85

3 4 5.6e-08 3.8e-05 24.3 1.5 2 68 318 382 316 383 0.93

4 4 0.51 3.5e+02 2.0 0.5 37 65 470 498 468 501 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	9.9e-19	6.8e-16	58.8	2.7	2	64	148	210	147	214	0.96
2	4	1.6e-06	0.0011	19.7	2.0	27	65	245	283	223	285	0.85
3	4	5.6e-08	3.8e-05	24.3	1.5	2	68	318	382	316	383	0.93
4	4	0.51	3.5e+02	2.0	0.5	37	65	470	498	468	501	0.92

Sequence Information

Coding Sequence: ATGGGTTTGGatcgtaaaagaaaatcggttaatacaattcaaaacactgataaaaaaaagaaaaacttaccagaaaagaaaatatcttCTTCCGAAGATTCCGACGAGCAGTCTGAGCACGACAATGGATTAAACGATGAagggaaaaatgaaattccaGCTGTTAGCCGATGGCCTCAAAGTGACATTCAGAAGCTTTTGTTTCGATTAGAATCGATACTTCCTAAGAATGACAATATTGCATTCCGAAGTAGATTATCGAAACTAGACTGGGAGAAAATACAGTTTGACAATTACAGTAAAGACGAATGTCAAGCTACGTGGTTAGCCATTCAAGATCAGcttaaaacgttcaaaactTTAAGCGATCTCATTCAAAATGCTAAAAATTTATTAGCCACTAAAGGCATCGATACGTATCAGTCGAAACAAAATCGTGTGCAAAAACCCCGGTCTGCGTACATGTTGTACTACACAGAAACCCTACAAAAATACAAGCAAAAACATCCGAACTTAAAGTTGCCACAGCTCACACAGCTAATCGCcgacaaatacaaaaaattatcgcccgagaaaaaacaatattatgtcgaTAGAGCGCAAAAATTAAAGACTGAATACATTGAACTGGTCGATAAAGCAAATATAGGCTTCAAACCTAAAGTGGATAAACCTAAAACTCCGTTTCAGATTTTTCTAGAATCTAAGTCGACCGACATAGACGGACACGTTGATAAAACTGAACTTCTAAACCACTTTAAAGAGAAATGGGAAAACATgtctgaaaagaaaaaatctaaATGGATTAAATTGGCTAAAGAACGAgaacaaacatatttaaacaatttgaaagAAGACCATAAAAACGATCCCGCTTTCACTATGCCCACAAAAAGTGCATTGACCAAAGgcgatagaaatattttagactCTCAGTCGGGCAAACCGAAAAAACCACCTGTCAACAATTACGGTCTGTTTTCTAAGGAAATGTTGCAAAGCAACGAATTATTTGGCGTTCCCCCGAAAGAAAGAATGTCAATTTTAGCCAAGAAATGGAAATCATTTACTAATGAAGAAAGACAAATTTATTCAGATAAGTTGAAAGTGATTACTGAACGTTATAAAACCGAGTACGatgcatatttaaatacgttaccGGAAGAAGAAAGACAAATAGAGATGgctcaaaataaaataaaacctaaaaaaactgAACCGAAAATTGTGCCGAGGATTAACGCTAGAGAAGGAATTCCAGAAAAGCCGAAAAAGAAGAACGCTTCGAAGTTCAACCAAAAAACTAAGACGTTTGAAAATGAACCAGCACGTTTCCCTTACGAAAATTCATTTGAATTGTATAGAAGCCAAGTAGCGCCAAATGAAAAACATCCAATTACAAGTTTAGAAGAGTGGAAGGTTAAAAGTGGGCGAAAGAAGTCtgtaattgaaaatgaatataaaatgctTAGAAAACAGTATATAAAAGaactacaaatatttttgaaatcactCTCTCAAAGTGATCTACAATTGTAcctaaaattaagaaaacctGAATTTGTGATGTCAACAAATGATAACGAATCGAGCACATCGGAGAGCGAAGAAGAATCTTCGtctgaagaagaagaagaagaagaagatgatgacgacgacgattctgATTcggattaa
Protein Sequence: MGLDRKRKSVNTIQNTDKKKKNLPEKKISSSEDSDEQSEHDNGLNDEGKNEIPAVSRWPQSDIQKLLFRLESILPKNDNIAFRSRLSKLDWEKIQFDNYSKDECQATWLAIQDQLKTFKTLSDLIQNAKNLLATKGIDTYQSKQNRVQKPRSAYMLYYTETLQKYKQKHPNLKLPQLTQLIADKYKKLSPEKKQYYVDRAQKLKTEYIELVDKANIGFKPKVDKPKTPFQIFLESKSTDIDGHVDKTELLNHFKEKWENMSEKKKSKWIKLAKEREQTYLNNLKEDHKNDPAFTMPTKSALTKGDRNILDSQSGKPKKPPVNNYGLFSKEMLQSNELFGVPPKERMSILAKKWKSFTNEERQIYSDKLKVITERYKTEYDAYLNTLPEEERQIEMAQNKIKPKKTEPKIVPRINAREGIPEKPKKKNASKFNQKTKTFENEPARFPYENSFELYRSQVAPNEKHPITSLEEWKVKSGRKKSVIENEYKMLRKQYIKELQIFLKSLSQSDLQLYLKLRKPEFVMSTNDNESSTSESEEESSSEEEEEEEDDDDDDSDSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01330521;
90% Identity: -
80% Identity: -