Cova002293.1
Basic Information
- Insect
- Chaetogeoica ovagalla
- Gene Symbol
- bab2
- Assembly
- GCA_032441825.1
- Location
- CM063724.1:12098958-12101941[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-11 1.6e-08 34.4 0.0 2 38 423 460 422 465 0.89 2 4 2.7e-12 4.1e-09 36.3 0.1 2 39 477 514 476 517 0.94 3 4 1.4e-16 2.1e-13 50.1 0.0 3 45 533 576 531 576 0.97 4 4 4.6e-17 7e-14 51.6 0.1 1 43 583 626 583 628 0.96
Sequence Information
- Coding Sequence
- ATGACAGTTAACGGCCAGCATTATTGTCTACGATGGAACAATTATCAGTCAAACATGACCTCTGTGTTTCATCAACTCCTGCGGAATGAATCTTTTGTTGATGTCACACTTGCTTGCAATGAGAGCTCGCTTAAAGCCCACAAAGTGGTCTTATCGGCTTGTTCGTCGTACTTTCAAAAACTATTGATGGACAATCCGTGCAAACATCCGACTATTATATTGCCGTATGACAtttgttttaacgatttaaagtTCATCATCGAGTTTGTGTACAGGGGTGAAATTGATGTGTCTCAAGCCGAATTACAAtctcTTCTAAAGACAGCAGATCAATTGAAGATTAAAGGATTGTGTGAAGTGCCCGAAGATGAACGTGATACTTCTATTGTCGCTGAAGTAACGCCACTTGGGCCATTGAAAAGTGGTGGACGAGTGTTTACCAAATTACAACGTAGAACTACACCTTATTCAAAGAAATTGAGTCCCAGTCATATTCAGCAGGATCAGTTCAacagaaattattatcaaattgaaCAGTCGAGTTTTGCACCTATTAATGTCGATCAAGAGAACAAATCCATTAAtTCTGTCCATTGCATGACTGTAGCAACATCTACCGAAGACGACGAGAAAGATATAAAATCAACACTGACCGATTTACCGGTTGTCATATTAGAACCACATCCTGCATTAAGTCTACAAGCCCAACAACAGCCCCAGATAGTTCATATACCTATATCGCAACAACAATTAAACCACGTAACTCAACATTCAAATCAATCGCATCAGTTGCAACAAGCTTCTGTTCAAACTCATTCACAAATGATAATCACAACAGATCCAGTTATAACAGTAAATGAAGCCGATATAACGCCTGATCTGCAGCCTTTGGGACCAAGGGCAACACCAGTACCAGTAAAAAACAACACAAGTCCCTTATCAACACCTACACATAGAGATATGGCTgtcGGTACATCGTGTTCAAATGATGTGATGAGAAATGATGGAAGCGaagtgaaatttgaaaatgttaaattcgAAACTCTCCGTACTATTGACCAATCATCAGATACAATTGGAAAAGAAAGACAACATTCTAATGACCgtaaTATAAATGATGAAGACAATTCAATGCATACAATGATGATAACACCAGAACTTTTGGGTTTATTACCGAATTCTTCTAACACGGGAGATGTCAGTGAAGATGGTTCTAGTAACTgtgtaaataaacattacgGTACAAACGGTGGCAAAGGATGGACAGCCGACGATATGGAAAATGCCTTAGAAGCATTGCGTTCACATAACATGTCTTTAACTAAAGCATCCATAACATTTGGAATTCCTTCGACAACGCTATGGCAACGAGCTCATCGAGCTGGTATAGACACTCCAAAAAAGGACGGACCTGCTAAATCTTGGAACGATGAAGCTTTGAATGTTGCTTTAGAAGCTTTGCGCACTGGTACTATTTCAGCAAATAAAGCCAGCAAGGCCTATGGCATTCCCAGTAGTACTCTGTACAAGATTGCACGGCGAGAAGGTATTCGCCTAGCTGCTCCATTTAATGCAGCGCCAACGTCTTGGGGTCAGGATCAGTTAGATCAGGCTTTACACGCCATACGCACTGGCCAAACAACTGTGCAACGAGCTGCAGCCGATTATGGCATACCCTCGGGTACACTGTACGGTCGGTGTAAACGCGAGAAAATTGAGCTATCCCGCAGCAATCCAACTCCGTGGTCTGAGGACGCTATGATGGAAGCTTTGGAGTCTGTACGATTAGGCCATATGAGTATCAATCAAGCAGCTATACATTATAATCTTCCATACTCTTCGTTATATGGCCGTTTTAAGAGAGTGAAATATGGAGCTGGACACCCAGATGAGGAATGTGATGATATGATTGATTCGGATACTCAGGGCGAGCAACAGCACatgcaacaacaacagcaacagcaacaacatTCATCAAATCAGCAAGTTCAGGCCACACCAGTGTCCCAAATCATGTTGGTACAATATCCTGCGCCACAGATCCAAATGTACCAACAGCACCCAACTCATTCGACGTCTAGTTGA
- Protein Sequence
- MTVNGQHYCLRWNNYQSNMTSVFHQLLRNESFVDVTLACNESSLKAHKVVLSACSSYFQKLLMDNPCKHPTIILPYDICFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPEDERDTSIVAEVTPLGPLKSGGRVFTKLQRRTTPYSKKLSPSHIQQDQFNRNYYQIEQSSFAPINVDQENKSINSVHCMTVATSTEDDEKDIKSTLTDLPVVILEPHPALSLQAQQQPQIVHIPISQQQLNHVTQHSNQSHQLQQASVQTHSQMIITTDPVITVNEADITPDLQPLGPRATPVPVKNNTSPLSTPTHRDMAVGTSCSNDVMRNDGSEVKFENVKFETLRTIDQSSDTIGKERQHSNDRNINDEDNSMHTMMITPELLGLLPNSSNTGDVSEDGSSNCVNKHYGTNGGKGWTADDMENALEALRSHNMSLTKASITFGIPSTTLWQRAHRAGIDTPKKDGPAKSWNDEALNVALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWGQDQLDQALHAIRTGQTTVQRAAADYGIPSGTLYGRCKREKIELSRSNPTPWSEDAMMEALESVRLGHMSINQAAIHYNLPYSSLYGRFKRVKYGAGHPDEECDDMIDSDTQGEQQHMQQQQQQQQHSSNQQVQATPVSQIMLVQYPAPQIQMYQQHPTHSTSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00184731;
- 90% Identity
- iTF_01330472;
- 80% Identity
- iTF_00308952;