Cova008600.1
Basic Information
- Insect
- Chaetogeoica ovagalla
- Gene Symbol
- TFDP1
- Assembly
- GCA_032441825.1
- Location
- CM063731.1:9310114-9314260[+]
Transcription Factor Domain
- TF Family
- E2F
- Domain
- E2F_TDP domain
- PFAM
- PF02319
- TF Group
- Helix-turn-helix
- Description
- This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-23 1.2e-19 70.1 0.0 3 65 44 118 42 118 0.97
Sequence Information
- Coding Sequence
- ATGTCTTCGTCGTCTTCAACGTCCTCTTACATCGTTGTCAAACAGGAAAACGAAGCCACTAGTCAAGTTCCCATTGTTAACATGGCCCCCATACCAGCttataaacgAAGACGAAATGAAAAACCAGGAAAAGGTCTACGTCACTTTGCCATGCGTGTTTGTGAAAAAGTGCGTAGTAAAATGGTAACTACTTATAATGAAGTAGCAGATGAACTTGTTGCTGAGTATCCAGAGGGTAGTAATGCGGAACaatATGACCAAAAAAATGTAAGGAGACGAGTGTATGATgctttaaatgttttaatggccatgaatattatatctaaagaaaagaaagaaatcaaATGGATAGGGTTGCCAGTAACTTCATTTCAGGAGTCTTCTACATTAACTCGGGAACGAGATGATATTATGGCACGAATCAATGAAAAACAAGCATTTTTACAAGATTTAATTGTACAAcaAGTTACATTCAAACaacttgttgaaaaaaataagaagtaTGAACAGATACATGGTCGGCCGTCTTCTGCATCAGTTCTTAGCTTGCCATTTATTGCCATTAAGGCTGATCCTGGAACTGTAATTAATTGCAGTATTTCACAAGACAAGAAAGAGTATTTGTTTGGATTCAGTAACAGTTATGAAATTGTAGAAGATATggattgtttaaaaaacatgAACCTTTCACTAGgtCTCAATACTGGTACAAGTACTGCAGAACAGTTAGAACAGGCAAAAACATTTGtaccaaaaaaattacatgaatTTTTATCtcGAATAGCAGTTGAATCGTCAGCCATGGAAATAGTAGAACAGCCAACAAAAAAGTTCAAATCCAGCTAA
- Protein Sequence
- MSSSSSTSSYIVVKQENEATSQVPIVNMAPIPAYKRRRNEKPGKGLRHFAMRVCEKVRSKMVTTYNEVADELVAEYPEGSNAEQYDQKNVRRRVYDALNVLMAMNIISKEKKEIKWIGLPVTSFQESSTLTRERDDIMARINEKQAFLQDLIVQQVTFKQLVEKNKKYEQIHGRPSSASVLSLPFIAIKADPGTVINCSISQDKKEYLFGFSNSYEIVEDMDCLKNMNLSLGLNTGTSTAEQLEQAKTFVPKKLHEFLSRIAVESSAMEIVEQPTKKFKSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00340373;
- 90% Identity
- iTF_01330365; iTF_01032674; iTF_01037538; iTF_01167396; iTF_00135109; iTF_00940167; iTF_01303977; iTF_01304650; iTF_00972844; iTF_00135949; iTF_00463149; iTF_00184401; iTF_00134035; iTF_01328405; iTF_00018808; iTF_01305338; iTF_00418076; iTF_00340373; iTF_01346261; iTF_01169650; iTF_00670035; iTF_01499445; iTF_00468761; iTF_01432827; iTF_01346878;
- 80% Identity
- -