Caur046881.1
Basic Information
- Insect
- Cetonia aurata
- Gene Symbol
- -
- Assembly
- GCA_949128085.1
- Location
- OX421890.1:10763020-10764343[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0095 1.3e+02 4.3 0.0 17 45 146 174 134 181 0.83 2 4 0.00029 4.1 9.2 0.2 22 46 179 203 174 206 0.90 3 4 4.3e-05 0.61 11.8 0.2 21 52 206 237 202 237 0.88 4 4 0.0012 17 7.2 0.0 21 48 234 261 232 267 0.89
Sequence Information
- Coding Sequence
- ATGCGTTGTCTTTTAAGGTTGCCATTAAATGATACAATGGAAGATAGGAGgtataaccatttcagcactttGGAGCCTGATGTTATTATAACTGATGGGacTATGTTAGAGGATAAACTCTCCCTACAAAAAGCAATCCTACAAAGGGATCCTCTAACATTGGGACCGGAAATCTCGATTATTCCCGTAAAACGAAAATCCTCGCCAAAAATACGAATAAGAAACTTTTTGACTGAATCAGATCTAGAAATCTCGGAAATCAAGCAAAATGTAAGACCGCCTAGAGGTAGCGTTCGAATAGTAACGCCCATCGAAATCCTGAAGGCGGAAAACGAACATGCCTACATGAAACGGAAATCATTGCCGTTGGAAAAGTGCCACATCtgcaaaaagtttttcaaacGCATGAAAACCCACCTGTTGAAACACGAAGAAGCGCGAAGGGATCCGAACGATCCCTTAACGTGCAAGCTGTGCATGAAGGCGTTCAACACTTATAGTAATCTTAGTATTCATATGAGGACACATACAGGCGATAAACCCTACATTTGCGACGTTTGTCACAAGTCGTTCTCGCAATCTTGTAACCTTGTTAATCATCTTCGAATACATACGGGCGAAAGACCGTATAAATGTCCGCACTGCGATCGGGCGTTTACGCAATCCGGTAACCTGACCAATCACATACGCTTACATACGGACGAGAAACCGTTTAAATGCCATTTTTGCGATAGGGCCTTTACGCAATCCGGAAACTTGAATTCGCATATTAGAAACAATCATAAAGTAGACGATTCGGTGAGGCAGTTTGGTGGTTTCCATTAA
- Protein Sequence
- MRCLLRLPLNDTMEDRRYNHFSTLEPDVIITDGTMLEDKLSLQKAILQRDPLTLGPEISIIPVKRKSSPKIRIRNFLTESDLEISEIKQNVRPPRGSVRIVTPIEILKAENEHAYMKRKSLPLEKCHICKKFFKRMKTHLLKHEEARRDPNDPLTCKLCMKAFNTYSNLSIHMRTHTGDKPYICDVCHKSFSQSCNLVNHLRIHTGERPYKCPHCDRAFTQSGNLTNHIRLHTDEKPFKCHFCDRAFTQSGNLNSHIRNNHKVDDSVRQFGGFH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01253062;
- 90% Identity
- iTF_00308370;
- 80% Identity
- iTF_00308370;