Cten131459.1
Basic Information
- Insect
- Ceriagrion tenellum
- Gene Symbol
- Trl
- Assembly
- GCA_963169105.1
- Location
- OY720642.1:127045629-127056524[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.9e-18 4.4e-13 52.1 0.0 20 50 232 262 211 265 0.87 2 2 1.1 8.6e+04 -3.3 0.1 15 24 273 282 269 284 0.74
Sequence Information
- Coding Sequence
- ATGGGCAGTAGTCAGCTCTACAGCCTTGCATGGGGGGAGTTTGGAACATCGCTTGTCTCTACTGTTCAGCTTCTTCGCTGTCATGGTGATCTTGTCGATGTCACTTTGGCTGCTGGTGGTAGAAGTTTTCCTGCCCACAAAATTGTCTTATCTGCTGCTAGTCCATTTCTGCTTGATTTAATCAAGAGCACACCTTGCAAGCATCCGGTGCTGTTGCTGGCTGGGGTTGCAGCCCACGACCTGGAGGCGCTGCTAGAGTTCGTGTACCGGGGAGAAGTGTCAGTGGACCCAAACCAACTGCCCTCTCTCCTCCAGGCAGCCCACTACCTCAACATTCAGGGACTTGCCCCGGCAGCCGTTGCATCCGAGaaaCTGGAGGAGTTACACATGGGATCCACTGTTCAGCAGAATCTAACGAAGGATGTCATCAATTCATTTTTGCCCTCAAGGAAACGAAAACGCAACCGACATAAGTCGGGCGGTAGCAGTCATGATGGGGGTGGTGGCAGTGGGGGTGATGTGGGAGGCAAATGGGCCCGTGGTGACCGGGACGATGGGATTGTGGGTGGGTCGGACGGAGGGGGGGACGATGGAGATGACGTGAAGGTTGGAGGAGGCCAGCAGAGGGCAGCATCGGATGGCGAAGCGCCAACCGGCACCAATGGAGAGGACTTCTCGGCCAAAAAGAGTGGTGTGAGTGACCAGCCAGCCATTTGTCCCCTCTGTGGTGCAACCATCAGGCAGTCGAGGAATTTGCGGCGGCATCTCGAGCTTCTACACTTTGGTGCATCTACGACGCGTGGAGGGTCACTTCGGGTCAAATCTCGGTCGTTCAGCCATCAGTCGACGAGGGCgggggaggtgagggagggaaGCTCGTCCCCCATTTCCCTCGTCTCACCACATCAACCCGCCGTCTCCATGGTCATACCCGCCAACCCTTTGATGGTAGTCAGCAGTGGGGACAGGTTAGGACTTGGAGACCCGCCCCATGGGCTCCTCGGGCATCTTCCACATCCTTTGTCGATACCCACGCCCACTGACCTCATGCTCAGGAGACACCATGATCCTGACACAAACTCGGCTGTTTACCCAGATTCAAGGACGACTCGAGGTGAAAGCCCGTCGGCCAGTACATCCCATTCAGCCATTGGTGGGGGCATTGTCTGA
- Protein Sequence
- MGSSQLYSLAWGEFGTSLVSTVQLLRCHGDLVDVTLAAGGRSFPAHKIVLSAASPFLLDLIKSTPCKHPVLLLAGVAAHDLEALLEFVYRGEVSVDPNQLPSLLQAAHYLNIQGLAPAAVASEKLEELHMGSTVQQNLTKDVINSFLPSRKRKRNRHKSGGSSHDGGGGSGGDVGGKWARGDRDDGIVGGSDGGGDDGDDVKVGGGQQRAASDGEAPTGTNGEDFSAKKSGVSDQPAICPLCGATIRQSRNLRRHLELLHFGASTTRGGSLRVKSRSFSHQSTRAGEVREGSSSPISLVSPHQPAVSMVIPANPLMVVSSGDRLGLGDPPHGLLGHLPHPLSIPTPTDLMLRRHHDPDTNSAVYPDSRTTRGESPSASTSHSAIGGGIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00307054; iTF_00261517; iTF_00261346;
- 90% Identity
- iTF_00307054;
- 80% Identity
- iTF_00307054;