Cruf012328.1
Basic Information
- Insect
- Cerceris ruficornis
- Gene Symbol
- br
- Assembly
- GCA_963989415.1
- Location
- OZ022518.1:24107882-24110334[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.8 4.5e+03 -1.3 0.3 33 45 193 206 190 206 0.85 2 5 3.6e-08 9e-05 23.3 0.0 2 38 210 246 209 252 0.85 3 5 7e-11 1.7e-07 32.0 0.0 5 39 263 296 260 303 0.85 4 5 0.37 9.1e+02 0.9 0.0 25 34 334 343 317 348 0.85 5 5 1.4e-11 3.6e-08 34.2 0.1 4 39 374 409 371 415 0.92
Sequence Information
- Coding Sequence
- ATGTCTGAAGTTGTTAGCCAACATGAGATCAATCAGAGCTACTGTTTCAAATGGAATGACTACCAGAACCATTTGTCCGATGTAGTTAGGCAATTACTAGAGGAGGGCTGCATGGTGGATGTTACCCTGGCTGCTGCCGGGGAACGTATTCATGCCCATCGTATTGTCCTTTGCGCTTGCAGCCCCTTGTTTCGAGAAGTCTTGAGTCAAGTAAATGAGGATCATCCGACGATAATATTAAGCGATATATCTGCTCAGGATGTGAGATCAATTATAGAATTTACCTACCATGGGGAGGTACGGATTCcggttgaaaatatcagtagttTATTGGATGCGGCACGTTCTTTAAAAATCTGTGGTCTTATAGAGATCGATGGACTCGATGAGAACGATATGGTCATGAAACATTTTAACGATACTAAGGAGTTCAGTGATGTGAAGGATTTCAATGATAATAAAGAGGAGTCAATGTCAGTCCTTAACGAATCTGAAGAAAATGTTATTAGCGTCTTACAGGGTGGATACGAAGATTTACAGGACCAAAGGGAACAGCAATCGGTTGAAAGTTCTATTCTGAGTAGGAGAAGAAAACGTAGACGGGATTCTGTAAAAAGAGAATACAGCGATGATATGCTTGTGTCAGCGATCAATGATCTACGATCGGGGCAGACATTAATAGAGGCTGCAACTAAACATAATATACCTCGGTCGACATTGTACATGCGTGCCAAAGCTTTAGGTATACATTTAAATGCATCAAGAAACGAATATCCCGCTGAATGTATGAAGGCAGCTATAAACGCAGTAATTGGTGGTTCAAGTTTGCAACACGCATCAGAAATGTTCAGTATtccgaaaactgttttatggaGAAGAATCCAAAAAGAAGGTTATCAAATATTGCGCTCGGAAATGAAGAGGTCCTATGGATCTGATAAACGAGAGGCTGCAGTTAAAGCTTTAGAGAGAGGAGAAAATCTAACGAAAGTTTCCCtcgaatttaaaATTCCAAAGACTACATTATTTAGAGATAAGGCACGTTTAGTAGACGAGGGCAAGCTACCGCTATCGTTTTGGAAGAAACGTAAGACGGAAAACGAGGAGCTGAAAAAGTCACGTTTGGAAGAGGCTGTTGCAGCTTGCAAAGGAGGAAAAATGTCGCAAGCTGCCGCATCGATGACTTATCATATTCCAAAGACGACGATATGGAGACGACTTCAACAGGACGGGAAGACATCGGAACGGCTGTTGAATTCGAAGAAACAACGAATAAACGATTCGAAGCATAGTACAGAAATAAAAACGCAAGAAAGGCCGGATTTCACGTATTGCGAGGTCTCAACCGAGATACCTATAACTTATATTGATGAAAATAGTATACCTGAAGATTCTGTGATAATATTAACAGCCGAGGATATGGACGGTCTTAATTTAGAGGAAGGAAGGCAAATCATTGTAAACTCTGAATCCGTACAAGAATATGTTCCGTGCGCTATAAGCATCgaggaaaattcgaattattcTCAAGGAGAAAGTTAG
- Protein Sequence
- MSEVVSQHEINQSYCFKWNDYQNHLSDVVRQLLEEGCMVDVTLAAAGERIHAHRIVLCACSPLFREVLSQVNEDHPTIILSDISAQDVRSIIEFTYHGEVRIPVENISSLLDAARSLKICGLIEIDGLDENDMVMKHFNDTKEFSDVKDFNDNKEESMSVLNESEENVISVLQGGYEDLQDQREQQSVESSILSRRRKRRRDSVKREYSDDMLVSAINDLRSGQTLIEAATKHNIPRSTLYMRAKALGIHLNASRNEYPAECMKAAINAVIGGSSLQHASEMFSIPKTVLWRRIQKEGYQILRSEMKRSYGSDKREAAVKALERGENLTKVSLEFKIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEELKKSRLEEAVAACKGGKMSQAAASMTYHIPKTTIWRRLQQDGKTSERLLNSKKQRINDSKHSTEIKTQERPDFTYCEVSTEIPITYIDENSIPEDSVIILTAEDMDGLNLEEGRQIIVNSESVQEYVPCAISIEENSNYSQGES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00118108;
- 90% Identity
- iTF_00306379;
- 80% Identity
- iTF_00306379;