Csol008844.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ceratosolen solmsi
Gene Symbol
prdm10
Assembly
GCA_000503995.1
Location
NW:2803117-2810192[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 7 0.00017 0.01 15.4 4.2 1 23 607 629 607 629 0.97
2 7 2.5e-05 0.0015 18.0 1.0 2 23 638 659 637 659 0.97
3 7 0.0019 0.11 12.0 2.2 1 23 722 744 722 744 0.97
4 7 7.3e-06 0.00044 19.6 2.3 1 23 750 773 750 774 0.96
5 7 0.0011 0.067 12.8 1.0 1 23 806 829 806 829 0.97
6 7 2.4e-05 0.0015 18.0 2.4 1 23 851 874 851 874 0.97
7 7 0.0025 0.15 11.7 3.4 3 23 912 933 912 933 0.98

Sequence Information

Coding Sequence
ATGGACCAAAGGGGCCCTCCTGAGGGGGCCCCTGTCATTGTCGCTGACCCCATGGATATGACAATCATAGATAAAGTTTGCAGCGAATCAAATTGGCCTGATGATAACATTGTTTCATCTTCAACCTTTTGTGATCATCCCAAAAAGCTTAACAACAAACTCTTATTCTTgacaGTTGAATATGTTGAAGAACAAGCAAGAGATTTTGGAAGAATGTATCCATCTTATGAGCAAGTTTCTTTTTCATCAAGAGCAAATTCTCCTTTATCAGACTTTGAACACTGTGTCAGTCCTCATGATCCGAATATGAGCTCTGCTGCAAGATATTCGCCAACACCAGTCCCACTGCCCTCTTCACCTTTCCATAACTCGATCGTTGTCCTTCAAGAGCCATCATCGCCTCTTATATCAACATCGGAATCTGCCGTACGAATCACTAATGGATACTCATCTCAACTTACCGATCAATCGTCTAACCCCAGTATTTCTCAAAGTGAAAACTCGCAAGATTTTACAGATAGTACAAGCGACGAATTGGTTTCAAGCGTTGGTAATGAGTTGATGCTTATACaaggttCAAATTCTGACTTGGAGCCTTCTTCTACTCCGCTTATGCTAGCGGGAATACCAGGATCTGATTTAGCTCTTGCAAGAGATTTTCTTGTTATGCAAGAAGATCAAATGAATGTtatgaattctataaaattaaattcaagccTTCATTCCAATGTTAATGAAGTTACTGAAACCATCTTACCGCATGATATAGATGAAGAAACGAATGCACAAATATCATCAATGAAAAGTTATAAGAAGTTCTCTGAACAATCTGAGAGAATTTTGGATTCTGAtaagaaagatatttattgGTGTAAGGATCAAATTAACGAGGACAGCTTAtGGTACGAGGACTGTGATAGCACTTGCACAGATGCAGCCGACTGTACCTTGCATAGTGTGTGCACCATCGCTGATCAACCTGTTCCTTCTAGAGCGGTCGCAACATTACCAgatctttatttatcaattgataaGCTATCGGCTTCGGATATTACCGACGGATCGCCAGAGTTTGGAGTTTTCGCAAAACGAAATATTCGTCGTCGCACTCAATTTGGTCCAATCGAAGGAATTTTACATCTTTATGATGGATCACAAATAAATAGTTTGCCACTGCTATTAGAGTCTAAAGAAGAGGGAGAGTTTTTGCAAATTGATGTATCGGATGAAAattCATCCAATTGGATGCGTTTTGTAAGACCTGCCCATACCTACGAGGAGCAAAATCTAATCATATGCCAGCAGAACGatggaataatatttctaacaaCCCGAAATATAATGCCCCAAGAGGAATTAAAAGCCGGTCCTAGTCTCGAATATGGAAAGCGTAGAAATTTACcagtatttgaatttaaacacGCAAATATAATTGATTCCAATATGGAATTTTGCACTCAGTCACATATAAAAACTGGTCAAATTGAAATTGCTGATGAgaagattaagaaaaattcaataattgaagATTATCGCAGTAATTCCTCAAAAGTTCTAATGAAACACAAAGCTGCTCAGAGTTCATTccaaaaatatctAGACATTATCGAAAACGAGGATAATATCATAACTAATTCAAAATCTCAAATTGAGAATAAAGTATCGTTTAATCATAAAGagctatcaaaatttaatcaacCAGAGAAAGGGCAAGAAAATTTTCCAGAttctaaattagaattaatgaaacaaGAAGTTACACAATCTGATCAAATTGATTTAACAGAAAAAGCAATTAATGTTGTTTCTTCAAGTATTTACAAGTGCACAGCATGCTCAAagcatttttcaacaaaatccAAGTTGCAACAGCATTCTCTAGTACATGATATTAAAGACAATGAATCTTTATCGtgtaatatttgttcaaaaacatttctaaataattcttCCCTATCTCgccatataaaaatacatcaaaAAGATGGTCAACATCTCGAGTGCGCTACATGTAAAGAAACTTATGGccatatattaacattaaaggaCTTTGATGAAACAGATCtcaataaagaagaagaaacatTTGTCTGTCCTCATTACCAAAAATCATTTACTAGTCATAGTCGTAAGCATTCCAGAACTCAGCATTTGGAACGAAAACACGAGTGCCAGATctgtttaaaatgttttcctGCAGCCGATAAATTAAGAATGCATTTATTGAAACATTCAGATCGCAGAGAATTCCAGTGTGCAAATTGCGGAAAACAATTTAAACGAAAGGATAAACTTAAAGATCATGTGATTCGTGTACATCATACACAAAAAACTACTAAGGACCAAATCTTGTCAAATAATCGTGCCAAAAAAACAATTCCAAAGGTAAATCCAGTAGATTGTGAccgttttatttacaaatgtcgTCGTTGCCAAGTCGGTTTTAAACGTAGGGGTATGCTCGTTAATCATTTAGCTAAACGTCATCCCGATGTCCCTCCTGAATCTGTACCAGAACTTAGCTTGCCAATTTTGCGCCAAACAAGAGACTATTACTGTCAATATTGCGACAAAGTCTACAAAAGTAGCAGTAAGCGAAAGGCGcacattatgaaaaatcatccAGGTGCAGCCTTGCCACCAAGcaatagaaataaagaatttgataTTCCTGGTTTACCTAATCCAACGTTCAGTCAGGCTGCTGGCAGTATTAAAACTGCTCCACAAGGATGCCAATGGTGTCACAAACAATATGCTAGTAAAGCGAAACTCTTACAGCATCAGCGCAAAAAGCATTCTAGTCTAATGGAACCTGCAGATCAAATTCCACGTCCACGAAGCCGTCCACCGCAGAATCAAAACCAACCGCCAGCATCGAATAACGCCAATATTAAAAGCTCGGGCATTACGAACGAGCATTATGAAATCTGCGAGGAACCGGAGGATCcagaatttataaaacctCGCATAATACGAATAAGCAGCGCAGCCAGTGACTCGTTGACCATTAACAACGGATTCGAGTTGCTGAACCCACAATTTACTCGCGTGCGGGACATGCGCTGA
Protein Sequence
MDQRGPPEGAPVIVADPMDMTIIDKVCSESNWPDDNIVSSSTFCDHPKKLNNKLLFLTVEYVEEQARDFGRMYPSYEQVSFSSRANSPLSDFEHCVSPHDPNMSSAARYSPTPVPLPSSPFHNSIVVLQEPSSPLISTSESAVRITNGYSSQLTDQSSNPSISQSENSQDFTDSTSDELVSSVGNELMLIQGSNSDLEPSSTPLMLAGIPGSDLALARDFLVMQEDQMNVMNSIKLNSSLHSNVNEVTETILPHDIDEETNAQISSMKSYKKFSEQSERILDSDKKDIYWCKDQINEDSLWYEDCDSTCTDAADCTLHSVCTIADQPVPSRAVATLPDLYLSIDKLSASDITDGSPEFGVFAKRNIRRRTQFGPIEGILHLYDGSQINSLPLLLESKEEGEFLQIDVSDENSSNWMRFVRPAHTYEEQNLIICQQNDGIIFLTTRNIMPQEELKAGPSLEYGKRRNLPVFEFKHANIIDSNMEFCTQSHIKTGQIEIADEKIKKNSIIEDYRSNSSKVLMKHKAAQSSFQKYLDIIENEDNIITNSKSQIENKVSFNHKELSKFNQPEKGQENFPDSKLELMKQEVTQSDQIDLTEKAINVVSSSIYKCTACSKHFSTKSKLQQHSLVHDIKDNESLSCNICSKTFLNNSSLSRHIKIHQKDGQHLECATCKETYGHILTLKDFDETDLNKEEETFVCPHYQKSFTSHSRKHSRTQHLERKHECQICLKCFPAADKLRMHLLKHSDRREFQCANCGKQFKRKDKLKDHVIRVHHTQKTTKDQILSNNRAKKTIPKVNPVDCDRFIYKCRRCQVGFKRRGMLVNHLAKRHPDVPPESVPELSLPILRQTRDYYCQYCDKVYKSSSKRKAHIMKNHPGAALPPSNRNKEFDIPGLPNPTFSQAAGSIKTAPQGCQWCHKQYASKAKLLQHQRKKHSSLMEPADQIPRPRSRPPQNQNQPPASNNANIKSSGITNEHYEICEEPEDPEFIKPRIIRISSAASDSLTINNGFELLNPQFTRVRDMR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00309747;
90% Identity
iTF_00304654;
80% Identity
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