Csol002985.1
Basic Information
- Insect
- Ceratosolen solmsi
- Gene Symbol
- Hr39_2
- Assembly
- GCA_000503995.1
- Location
- NW:4280161-4385206[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.29 1.3e+03 -2.5 21.4 39 165 242 360 230 407 0.48 2 3 2 9.2e+03 -9.5 16.0 40 73 426 459 410 481 0.47 3 3 2.5e-73 1.1e-69 234.9 28.7 1 408 590 1025 590 1025 0.76
Sequence Information
- Coding Sequence
- ATGTCCGAGCACAGTGGAGCCGGGCCGGCGGAGCCCGGTCCAGCCTGGTGGCCGCCGGCCCAGGGCTGGAAGACCTCGAGCGGACAGCAGAGCTCCGGGGTGGCCGGTGTCCTCAGAACGCCCGAGCCCGGCAAGAACGTGTCCGTCACCACGATTAACGTGCCACCGCCGTTACACGAAATGCACGACGGGAAGAGAGCGTGCAAGTACCTGGGNNNNNNNNNNAAGTACCTGGGTGGACAGAACGGCGTGACGGTGTCGGTGGTCTCGAGTCGCGGTGCGATCTCCGGGGCGGACTCAGGCTCGGGCTCAGCCGACTCCGCCTCGGCCTCCGTAGACGACGTCGAGGGAGACAGCGACGGCGAGGTAAGCAGGATCGACTTCCGCGGCGTCAACTTGCGCACGAAGAAGAAACGGGAGGCTGGACTGGCCGTCGTCGACAACAACGAAAATTCGTGCAGCGCCGACGTAGCCCTGCAACACCAACAGCCGGAGAGGCCCATGTCCTGGGAGGGTGAGCTCTCCGACCAAGAAATGTCTTCCAACACCATCACCAACCAGGATCACGAGGAAACGTCGATGGAGGGCGTGCAGGTGTGCAGCTCTAGTCCCGGGCCGCAGGAGCAAAAGTTCCCGATAAAGCCAGAGCCGGATTTTCGCTCGAGTCCCGGACTCCAGAGCCTCGGTGGCAGCTCCCTCAACGAGACAATAATCGCCGTGTCGCATGTACAACAGCTCCATCAacagcagcatcagcatcacCAGCAGActcatcaccaccaccaccatcaccagcatcagcatcagcagcaacaccagcagcaacagcagcaacagcagcaccatcagcagcagcagagcATCGAGCAGAGCCAGCAGAGTGACCTGCCGCTCCTCGTCGGCAAACTTCTCGGCGGCTGTAACAGCTCCACGCCCAATCACAGCCCCGTACTCATTCCTCGGCATCATCTCACCAAGCACAGTCACACCAGATCTCAAGTTCCATCCCCGGACTCGGCAATCCACTCGGCCTACAGCGTCTTCAGCTCGCCGACGCAGTCGCCGCATGCGGGCCGCCACTCGGCCCTCGGCCCAGGCTCACCCGTGCCCTCGTCCTCGCTCTCCCTCTCGCGGCACAGCTTCAACAATTCGACCTcgtcgctctcgctctctctgtCGCACTCGCTTTCCCGCAACAACTCTGACGCCTCGAGCAGCTGCTACAGCTACGGCTCCCTCAGTCCGCCAACGCACTCGCCAGTCCAGCAGCGCCACGCTCATCTCcaccaacagcagcaacagcagcagcaacaacaacaacagcaacaacaacagcaacaacagcaacaacagcaacagcaacaacagcaacaccAGGTACAGGGAGGTGGTCCGGTGCATTTGCAGACGGGAGTGTCGCAGGGACACCACTATGGTGTTGGACCTGGACTTGTTGGAGCGACCGAGCTCGGCGAGAATCACCTCGACGACCAAGACGACTGCCGAATACCTTCCGCACCCTCTGGCATCTCCACCAGGCAGCAGCTCATAAATAGCCCCTGTCCAATATGCGGAGACAAGATAAGCGGCTTTCACTACGGCATTTTCTCATGCGAGTCTTGTAAGGGATTCTTCAAGAGGACGGTGCAGAACCGGAAGAATTACGTGTGCCTTAGGGGGGCCGGCTGTCCGGTGACGGTAGCCACGCGGAAAAAGTGCCCGGCCTGCCGCTTCGACAAGTGCCTCAACATGGGCATGAAACTCGAGGCCATCCGGGAGGACAGGACGCGGGGCGGACGCAGCACCTACCAGTGCACCTATACGCTACCGGCGAGCCTAATGGGGGGCTCGGCCCCGGGTTCCATCCCTCAGGACAAGATGGCCCAGGGCAGTCCTTGCAGTCCAGCTGCCCAACCCGTCGGCGATCATCATCACTCCCTGAAGCACCAATCCAGTCATTCCCATAAAGCGCAGATGGTACCTCAATTACTCCAAGACATAATGGACGTTGAGCACCTTTGGCAttacaacgacaacgacaggCTGGGCTCCGGCCAATCCATGAGCTCCTTCAACGTGACCCAGagCGCACCCTCGTCTGGTATGGGCAGCAGCGCGAGTggcaacagcagcagcggAGACTCGCTCAATGGCTTAGGGGTGAGCAACAGCGGCGGCGGGAGCAGCGGTGCGACTAGCAACGGCAATTCGAGCAGCCGCAGCGAGCGTCCAAGTTCCTCCGGTTCCGCGACCACCAGTCCTATCCAcgagcagcaacagcagcagcatcaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacagcctCAGCAGCAGCCCcatcagcaacaacaacagcagcagcaacagcaacggcACTCGCCAACGTCGGCCGCCGGAGGCAACGCAACCAGCGGTAACCAGCAATCGTCCGGCTCCACCAACGGCAACTCCACTCATCACCCGGATTTCCTTTCGAATCTCTGTAACATAGCCGATCACCGCCTCTATAAAATCGTCAAGTGGTGTAAGAGCTTGCCACTCTTCAAAAACATCTCCATCGACGACCAAATATGCTTGCTAATAAACTCCTGGTGCGAGCTTCTGCTCTTCTCCTGCTGCTTTCGCAGCATGAGCACCCCCGGGGAGATCCGAGTATCCCTCGGCAAGTCCATTACCCTGGAGCAAGCGAGGCAACTCGGCCTCGCGACCTGCATCGAGCGAATGCTCGCCTTCACCAACAATCTCAGGCGACTCAAGGTCGATCAGTACGAGTACGTCGCCATGAAGGTGATAGTGCTACTCACGTCGGACACGAGCGAATTGAAGGAGCCGGAGAAGGTGCGTGCCTCCCAGGAGAAGGCCCTCCAGGCGCTTCAGCAGTACACGATCGCGAGGTACCCGGAGATGCCGGCCAAGTTCGGCGAGCTTCTGCTACGGATCCCGGATCTTCAGCGTACCTGCCAGGCTGGTAAGGAGCTGTTGAGTGCCAAGCGCGCCGAGGGCGAGGGCTGCTCCTTCAACCTGCTAATGGAGCTTCTGCGTGGCGATCACTGA
- Protein Sequence
- MSEHSGAGPAEPGPAWWPPAQGWKTSSGQQSSGVAGVLRTPEPGKNVSVTTINVPPPLHEMHDGKRACKYLGXXXKYLGGQNGVTVSVVSSRGAISGADSGSGSADSASASVDDVEGDSDGEVSRIDFRGVNLRTKKKREAGLAVVDNNENSCSADVALQHQQPERPMSWEGELSDQEMSSNTITNQDHEETSMEGVQVCSSSPGPQEQKFPIKPEPDFRSSPGLQSLGGSSLNETIIAVSHVQQLHQQQHQHHQQTHHHHHHHQHQHQQQHQQQQQQQQHHQQQQSIEQSQQSDLPLLVGKLLGGCNSSTPNHSPVLIPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAGRHSALGPGSPVPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQRHAHLHQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQVQGGGPVHLQTGVSQGHHYGVGPGLVGATELGENHLDDQDDCRIPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPASLMGGSAPGSIPQDKMAQGSPCSPAAQPVGDHHHSLKHQSSHSHKAQMVPQLLQDIMDVEHLWHYNDNDRLGSGQSMSSFNVTQSAPSSGMGSSASGNSSSGDSLNGLGVSNSGGGSSGATSNGNSSSRSERPSSSGSATTSPIHEQQQQQHQQQQQQQQQQQQQQQQQQQPQQQPHQQQQQQQQQQRHSPTSAAGGNATSGNQQSSGSTNGNSTHHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLKVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGCSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305692; iTF_00305664; iTF_01219137; iTF_01219154; iTF_01219129;
- 90% Identity
- iTF_00305692; iTF_00305664;
- 80% Identity
- iTF_00305692; iTF_00305664;