Cfus018509.1
Basic Information
- Insect
- Ceratosolen fusciceps
- Gene Symbol
- -
- Assembly
- GCA_018883505.1
- Location
- RCIC01000004.1:8353212-8354448[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.5 4.9e+03 -2.1 0.0 34 45 41 52 33 55 0.59 2 4 0.00041 4 7.8 0.1 21 43 56 78 39 83 0.83 3 4 0.0012 11 6.3 0.3 21 45 84 108 79 116 0.81 4 4 3.1e-07 0.0031 17.7 0.5 10 47 128 166 120 171 0.79
Sequence Information
- Coding Sequence
- ATGTCCGTGCAGCAAGAGAGGCCCCTGGACTTGAGCTGCAAAAGGAGGAAGGGGGAGGTAGACCGGAAGGGCCGGAAAAACCTCAAGTGCCTGCTACCCTGCCAAGTATGCGGGAAGAATTTCGACAGGCCGTCCTTGCTAAAAAGGCATTTGCGCACCCACACAGGGGAGAAACCGCACGGGTGCCCGATCTGCGGGAAAACCTTTAGCACGAGCAGTTCCCTCAATACGCACGCGAGAATCCACACGGGCGAGAGGCCACACGAGTGTCCCATGTGCGGTAAACGGTTCACCGCATCCTCCAACCTCTACTACCATCGAATGACTCATTACAAGGTGAAGCCGCATAAATGTACGGAGTGCGAGCGCTCCTTCCCCACGCCCGGGGACTTGCGAGCTCACGGCTACTCTCACTCGGGGAACTGGCCCCTGAGATGCCCGATCTGTTTCAGGGGCTTCTGCAAGCCAAGGATCTTACAGCGTCATTTGGAGCTTCACAATGGTGTCCGTAGAATTTTTAAGAAGAGATTCTCTGCAGCCAACACGTCCCGCACACTAAAACAACCGACCGACGATAAACGACTCGGCTCCCTAATCTTCCCTTGCATAACGAACGTCCCTGTCTCGTCCTTACCATGGATACTCTAA
- Protein Sequence
- MSVQQERPLDLSCKRRKGEVDRKGRKNLKCLLPCQVCGKNFDRPSLLKRHLRTHTGEKPHGCPICGKTFSTSSSLNTHARIHTGERPHECPMCGKRFTASSNLYYHRMTHYKVKPHKCTECERSFPTPGDLRAHGYSHSGNWPLRCPICFRGFCKPRILQRHLELHNGVRRIFKKRFSAANTSRTLKQPTDDKRLGSLIFPCITNVPVSSLPWIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305188;
- 90% Identity
- iTF_00305188;
- 80% Identity
- iTF_00305188;