Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 3.7e-18 9e-15 54.2 0.0 1 43 28 71 28 73 0.95

2 2 0.33 8e+02 -0.0 0.3 6 15 152 161 147 164 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	3.7e-18	9e-15	54.2	0.0	1	43	28	71	28	73	0.95
2	2	0.33	8e+02	-0.0	0.3	6	15	152	161	147	164	0.86

Coding Sequence: ATGTGGCAAAAGTGTTGGAACACCAATCAGAGTCTAGTGCACAACCTGCGCTTTCGGGAGCGGGGCCCACTAAAGTCCTGGCGACCGGAAACGATGGCAGAGGCGATCTTCAGCGTACTCAAGGAGGGCCTATCCTTGAGCCAAGCGGCCAGGAAATACGATATTCCATATCCGACGTTCGTACTTTACGCGAACCGAGTACATAACATGCTGGGACCGAGCGCCGACGGTGGAGCCGGTAAGTATTTGCGACCGAAGGGCCGGGGGAGGCCTCAGAGGATCCTCCTCGGCGTCTGGCCGGACGAGCACATCCGCGGCGTCATCCGAGCGGTGGTGTTCCGCGACGGACACTCCCCCCACATCGTCAAGGAAGAACCGACCACCATGTACCCCGCCCTGGCGAATTACGGCGCGTGCAACGGCCCCGAGGGAGCCGTCAGCCCTAGCGCGGCCGCGGCCGCGGTTGCCGCTGTCGCCCAAGGTCTCCGACACCAGATGTGCAGTATGGTCGCAGCTGCCCATTCCCAGCAACACGACATGCTTGCGACGAACCTCTCTACGAGCCTCTCTCCCGGCTCCGGGGGCCCACCCGAGAGCCCTATGGAGTCGCCCCTCGCGAGTCCCCTGGGCGCCCTCATGGATCCCTCGCACTTGGCCTCGAGCGTCGAGGTCGGGATCGGCGTCAGCGGCATGACCTACAAGCCCGCGCGCAGCTTCGTCAGCCCCCGGCCGGAGACGCTTTTCCAGGAGGACATCTCGGACCTCGTGAAGAGCTCGCACGTGGCCCTTAAGGAAAAGGAGAAGATCGCCGTCAAGCTCGAACCCCTTACGGACTCGCGGTGCGAATAG
Protein Sequence: MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGAGKYLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDGHSPHIVKEEPTTMYPALANYGACNGPEGAVSPSAAAAAVAAVAQGLRHQMCSMVAAAHSQQHDMLATNLSTSLSPGSGGPPESPMESPLASPLGALMDPSHLASSVEVGIGVSGMTYKPARSFVSPRPETLFQEDISDLVKSSHVALKEKEKIAVKLEPLTDSRCE

Sequence clustering based on sequence similarity using MMseqs2