Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 3.2e-06 0.0079 16.0 0.1 2 38 33 68 32 74 0.88

2 4 8.2e-15 2e-11 43.5 0.0 1 39 82 119 82 123 0.95

3 4 6.4e-05 0.16 11.9 0.0 6 34 139 166 136 172 0.89

4 4 1.1e-12 2.7e-09 36.7 0.0 4 39 197 232 194 237 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	3.2e-06	0.0079	16.0	0.1	2	38	33	68	32	74	0.88
2	4	8.2e-15	2e-11	43.5	0.0	1	39	82	119	82	123	0.95
3	4	6.4e-05	0.16	11.9	0.0	6	34	139	166	136	172	0.89
4	4	1.1e-12	2.7e-09	36.7	0.0	4	39	197	232	194	237	0.92

Coding Sequence: ATGAAAGATTCAAGAATACGTATATTGGACGGCGATTCCGAGTCGATTCATAAAAAGAGAAGGCGAAGGAAAAGCGTTTGTAAAAAAGAATACAGCGACGAGATGCTGTCGGCCGCCATTGCCGACATACGCGCCGGAAGTTCCTTGCTGGATGCCGCGGCCAGAAACCATATTCCCAGATCTACCCTTTATATGCGCGCAAAAGTCTTGGGAATACCTTTGAATCCATCCAGAAGCGAATACACAAACGAAGACATGAAAGCGGCCATAGATGCGGTTATCGCCGGTTCGAGTTTACAACAGGCTTCTGATTTATACGGAATACCGAAAACGGTTTTATGGAGAAGAATTCAGAAGGAAGGCTGTCAGACCCCTAGACACGATACGAGAAAGAATTACGGGGCCGATAAAAGGGAAGCCGCCGTGCAAGCCTTAGCGAGAGGCGAAACTCTGACGAAAGTCGCCAACGAGTACAAAATCCCGAAAACAACATTGTTTCGCGATAAGGCCCGACTAGTGGACGAGGGTAAGTTACCGTCCTCGTATTGGAGAAAGCGTAAAACTGATACTGAAGATCTAAAACGATCTCGATTAGAGGAAGCAGTGGCCGCGTGCAAGGACGGGAAGATGTCCCAAGCAACGGCCTCCGTAACTTATCAAATACCTAAAACTACCATATGGAGGCGCCTACAGAAGGATATTAAAAAGGAGGTACTTCCAGGTACTACGAAACTTCAGCTAAAAAATGAAATACCAGATGAAAAAGGTTTAGAGAATGTTAAGGCAGAAGATTTAAACGAAGCTGATTTCGAAGCGTATTGTCCAGATGACTCGGAGATGAACATAACATATATCGATGAAAATAATATATCGGACGATCCAGTAATAATTCTTGCAAGTGACGATGTACACGAACTTAATTTACCGAATAGTAGATCGCTGGTTGTTGTACAGGAAAATGCGGACGATAATTTTATGTCTTGTGAATTAGAAATGGACGAAAGCTCAACTTTTGTATCAAAAAGTTAA
Protein Sequence: MKDSRIRILDGDSESIHKKRRRRKSVCKKEYSDEMLSAAIADIRAGSSLLDAAARNHIPRSTLYMRAKVLGIPLNPSRSEYTNEDMKAAIDAVIAGSSLQQASDLYGIPKTVLWRRIQKEGCQTPRHDTRKNYGADKREAAVQALARGETLTKVANEYKIPKTTLFRDKARLVDEGKLPSSYWRKRKTDTEDLKRSRLEEAVAACKDGKMSQATASVTYQIPKTTIWRRLQKDIKKEVLPGTTKLQLKNEIPDEKGLENVKAEDLNEADFEAYCPDDSEMNITYIDENNISDDPVIILASDDVHELNLPNSRSLVVVQENADDNFMSCELEMDESSTFVSKS

Sequence clustering based on sequence similarity using MMseqs2