Ccor023421.1
Basic Information
- Insect
- Ceratosolen corneri
- Gene Symbol
- -
- Assembly
- GCA_030522565.1
- Location
- JAPYYT010017473.1:1-2258[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.3e-06 0.0085 16.9 0.0 2 38 77 112 76 118 0.88 2 4 1.3e-14 5e-11 43.3 0.0 1 39 126 163 126 167 0.95 3 4 0.00011 0.4 11.6 0.0 7 34 184 210 180 216 0.89 4 4 1.8e-12 6.7e-09 36.5 0.0 4 39 241 276 238 281 0.92
Sequence Information
- Coding Sequence
- atTGAAGGTCTCGATGAATCTGAAATACCTTACGAGATAGACACAACCAACGAGGAAGCATATATTTTTAGTGATTTGAATAAAACGGAAGAAGAAGAGATGAAATTCTTTGAACAGTCAAACAATGAAGATATCAAAGAAACGAAAGCAAGAATTTTGAATGGCGATTCGGATGCTATTCTCAAAAAGAGGAGGCGAAGGAAGAGTGtttgtaaaaaagaatatagCGACGAAATGTTATCAGCGGCTATCACTGACATACGCTCTGGGAGTTCGTTATTAGATGCAGCCGCAAGGAATCATATTCCTAGATCTACTCTTTATATGCGTGCAAAAGTATTAGGAATACCTTTAAATCCTTCCAGAAGCGAATATACAAATGAAGATATGAAGGCAGCTATAGATGCAGTTATTGCCGGATCCAGTCTGCAACAAGCTTCGGATTTATATGGGATTCCAAAAACAGTTTTATGGAGGAGAATTCAAAAAGAAGGATGTCAAACACCTAGACACGATACGAGAAAAAATTATGGTGCTGAAAAGAGAGAAGCCGCTGTGCAAGCATTAGCAAGAGGGGAAACCCTTACGAAAGTTGCAAACGAGTACAAGatTCCGAAAACAACCTTATTTCGTGACAAAGCTCGATTGGTAGACGAAGGGAAACTGCCATCGTCATATTGGAGAAAACGTAAAACCGATACCGAAGATCTAAAACGATCTCGTTTAGAAGAAGCAGTTGCCGCATGTAAAGATGGGAAAATGTCTCAAGCGACAGCATCCGTCACTTATCAAATACCTAAGACTACTATATGGAGGCGTCTccaaaaagatattaaaaaagagGTAGTTACATCTACTACAAAACTACATATGAAAACCGAATCACCTCAAGAGAGGAGTCCAGAGACGGTAAAAGCAGAAGAATTAAATGAGGCAGATTTCGAAGCATATTGTCCTgACGATTCAGAAATGAATATAACATATATCGATGAAAGTAATATATCGGATGATCCAGTAATAATACTTGCGAGCGATGATGTACACGAACTAAATTTACCAAATAGTTCATCGTTAGTTGTCGTACAAGaaaatactgatgaaaattttatgtcGTGTGAATTAGAATTAGATGAAAATTCGACTTTCGTATCAAAAAGTTAA
- Protein Sequence
- IEGLDESEIPYEIDTTNEEAYIFSDLNKTEEEEMKFFEQSNNEDIKETKARILNGDSDAILKKRRRRKSVCKKEYSDEMLSAAITDIRSGSSLLDAAARNHIPRSTLYMRAKVLGIPLNPSRSEYTNEDMKAAIDAVIAGSSLQQASDLYGIPKTVLWRRIQKEGCQTPRHDTRKNYGAEKREAAVQALARGETLTKVANEYKIPKTTLFRDKARLVDEGKLPSSYWRKRKTDTEDLKRSRLEEAVAACKDGKMSQATASVTYQIPKTTIWRRLQKDIKKEVVTSTTKLHMKTESPQERSPETVKAEELNEADFEAYCPDDSEMNITYIDESNISDDPVIILASDDVHELNLPNSSSLVVVQENTDENFMSCELELDENSTFVSKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00304984;
- 90% Identity
- iTF_00304984;
- 80% Identity
- -