Ccal004873.1
Basic Information
- Insect
- Ceratina calcarata
- Gene Symbol
- nfxl1
- Assembly
- GCA_026724355.1
- Location
- JAKKRE010000004.1:1276501-1279194[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.1 1.4e+04 -3.2 1.1 15 19 126 130 125 130 0.81 2 18 0.15 1.9e+03 -0.5 0.8 4 10 161 167 160 167 0.95 3 18 5.6e-08 0.00075 20.0 15.1 1 18 175 191 175 192 0.98 4 18 3.2e-07 0.0043 17.6 15.5 4 19 231 246 229 246 0.94 5 18 0.29 3.9e+03 -1.4 0.3 5 10 270 275 270 277 0.90 6 18 9.5e-07 0.013 16.1 10.1 1 18 281 299 281 300 0.90 7 18 0.00039 5.3 7.7 11.4 1 18 336 353 336 354 0.97 8 18 0.0069 92 3.8 7.6 1 12 388 399 388 399 0.94 9 18 1.2 1.6e+04 -3.4 1.7 6 10 409 413 409 413 0.97 10 18 8e-08 0.0011 19.5 12.5 1 18 419 436 419 437 0.92 11 18 1.7 2.3e+04 -3.9 1.3 6 10 466 470 465 470 0.76 12 18 8e-05 1.1 9.9 9.4 9 19 485 495 483 495 0.90 13 18 0.0025 34 5.1 6.2 1 12 505 515 505 515 0.95 14 18 0.86 1.2e+04 -2.9 5.8 14 18 547 551 547 552 0.89 15 18 0.00029 3.8 8.2 6.9 1 12 588 599 582 599 0.91 16 18 0.61 8.2e+03 -2.5 1.0 6 10 615 619 614 619 0.88 17 18 0.0013 17 6.1 17.3 3 19 628 644 627 644 0.92 18 18 3e-05 0.41 11.3 12.3 1 16 689 703 689 709 0.86
Sequence Information
- Coding Sequence
- ATGCAGAAGTTTAAAAGAGCCCAAGCAGAGAATAAAATAGCGATTAATAAACATTTGCAAGCAAATGCCTATTTGGAATCTTCGAGCGAGGATGAAGACGAAAGGAACGAAGATGAGATGCAAAACGTTATTGGGAAGGTACTGTCTGCGTACCAAGGGAGGGAGGCAGACGCAGAGAAGATTTTATCGTACTTGATCAACATCTTTCAATCCAACAGTGCTGTCTGCCTAATATGTATCTCAACAGTGAAGAAAGCAGACCCAATCTGGAATTGCAGCAAATGTTTCGCTTTCCTCCATCTGTCTTGCATCTTACATTGGATTCAAGACAGTTTAAACGTTAAACGCGAGAAGGGCATCACGCCAATATGGGCATGTCCGAAATGTCGCATGGAGTATGACCAGGACGAAGTTCCTCGTAACTACAAATGCTTTTGTAGGAAAGTAACAGATCCGTCGTGTCAGCCATGGAACATTCCACATTCCTGTGGTGAGACGTGTAGCAAGCCGTTGCAACCAGAATGTGGACACAAATGCGTTTTACTGTGCCACCCTGGACCATGCCCTCCTTGCGCACAAGTCGTGTCTATAAAATGCTTCTGCGGGAAACAGATGCCTCAGCAACGACGGTGTAACGACAAGAACTGGAGTTGCGGCACTGTGTGCAATAAAAGATATCAATTATGTCCGCACAGTTGTAAAGAAGTGTGTCACTCTGGCGAGTGTCCGCCTTGTTCGGAGGTGTTGCAGCTTAAATGCCACTGCAAGAGTAACGAGGAACTGAAGTTGTGCTCGGAGGGTCCGTGGACTTGCGACAAGCCCTGCGGTAGACTACTTTCCTGCAACGTGCACACGTGCCAAAGTACGTGCCACTCGCTCGGTGACTGCGAGCCTTGCTTGCTAGAGAAAAACAGGACGTGTCCATGCGGCAAGAAGCGTTACGCTGTTTCATGCAAACAGGAGCAATTGCCAACGTGCGGTGACACGTGCGGCAAGTTGTTAGACTGTGGCTCACATTACTGCAATATGCGATGTCACACGGATCGTTGCGGACATTGTTTAGAAGTGGTCACCAAATCCTGCCGATGCGGCAGCTACCAGAAGGAAGTAGCGTGCGGCAAGGAGTTTCATTGCAACAAGAAATGCATGCAGACACGCTTATGCGGCAGGCACTTGTGCAATAAGAAGTGTTGCGACTGCCTGATTAAAAACACGTACAACGTGTGCGAGAAGGTATGCGATAACACCCTGAACTGCCGGAAACACAAGTGTTCCGCTCCGTGTCACAGCGGTCCGTGTTATCCGTGCGCGCGGACCGAAGTCATTCATTGTAGATGCGGGTATAAGAAGATCACGGTGCCGTGTGGTACGATGAAGAAGATTAAACCTCCACCTTGTAACAAACCGTGTAAAATACCGCCGATCTGTCACCACCCAAAAAGGGAGACACACAAATGTCATCAAGGCCCTTGTCCACCTTGTAGAAAGATCTGCGGTCTGGTGTATAAACGTTGCGGCCACTCTTGCGTCGCCGTTTGCCACACGAAGGTCTGGGTGAAGGTAAATAAAAACGAGATGAAGACGCAGCCAGCCGGACCGTGGGACATACAAAAGGAAACCATGCAACTGAAAACGTTGCCATGCCCTCCGTGCGAGGTTTCCGTGCCAGTCACGTGTTTGGGCGGACACGAGACGAACCCATGGCCGTGTCATATGGCCAGGCCTACCCCCTGCTGGAGATTCTGCGGGAGAACGTTACCGTGCACGAACCACACCTGCGAATTGATCTGTCACAAAGTGCCGTCTTCCGTGGATCATAAGAACACCGTCCCTTGCATGGACTGCGAGAAGCCGTGTCTTTTTCCACGACCACAAGGTTGCACGCACTCGTGCCCGAAACCTTGCCATCCCGCGCCATGTAGCCCTTGCAAGCAGCTAGTCAAGATCTCGTGCCACTGCGGCATAAGTACATTGTACCGCAGGTGTTCCGAGCTGACGTCGGCCAAACCCGAACAGCGGGATGAATTGCTTAAATGCGGCAATCAATGTCCGAAAAATTACGCTTGCGGACATCGCTGCGTCAACAACTGCCATCCGGGCCCGTGTAAAAACGAAAGAGAGTGTAAACAGAAGGTGAAGCTGTTTTGCACGTGCAAACGCATTAAAAAGGATTTCGTTTGTTCGACAGTGCAGAAAGAGGAGATCCGCATCAGCTGCGACGATGTTTGTAAGAAGTTAAAGGAGGAAAAACGATTGGCCGAGGCCGCGTTGTTGGAGCAGAAACGCCAAGCCGAAGAAATACGTAATCAGCAGGAGATCGAGAAGTTCGAACGAAAGTTCAAACCCCGACGCAAAGGGAAGGACAGGCTTGACAAGAGACAAATACAGAAAGAGAGTTGTGGTAATTACAAAAAGTACAGCATTCTGGCTGTTTTAGTATGTCTAATAGGCGTCGTAATGTTTTATATAAACGTCCAGACATCTTCAACGAAATAA
- Protein Sequence
- MQKFKRAQAENKIAINKHLQANAYLESSSEDEDERNEDEMQNVIGKVLSAYQGREADAEKILSYLINIFQSNSAVCLICISTVKKADPIWNCSKCFAFLHLSCILHWIQDSLNVKREKGITPIWACPKCRMEYDQDEVPRNYKCFCRKVTDPSCQPWNIPHSCGETCSKPLQPECGHKCVLLCHPGPCPPCAQVVSIKCFCGKQMPQQRRCNDKNWSCGTVCNKRYQLCPHSCKEVCHSGECPPCSEVLQLKCHCKSNEELKLCSEGPWTCDKPCGRLLSCNVHTCQSTCHSLGDCEPCLLEKNRTCPCGKKRYAVSCKQEQLPTCGDTCGKLLDCGSHYCNMRCHTDRCGHCLEVVTKSCRCGSYQKEVACGKEFHCNKKCMQTRLCGRHLCNKKCCDCLIKNTYNVCEKVCDNTLNCRKHKCSAPCHSGPCYPCARTEVIHCRCGYKKITVPCGTMKKIKPPPCNKPCKIPPICHHPKRETHKCHQGPCPPCRKICGLVYKRCGHSCVAVCHTKVWVKVNKNEMKTQPAGPWDIQKETMQLKTLPCPPCEVSVPVTCLGGHETNPWPCHMARPTPCWRFCGRTLPCTNHTCELICHKVPSSVDHKNTVPCMDCEKPCLFPRPQGCTHSCPKPCHPAPCSPCKQLVKISCHCGISTLYRRCSELTSAKPEQRDELLKCGNQCPKNYACGHRCVNNCHPGPCKNERECKQKVKLFCTCKRIKKDFVCSTVQKEEIRISCDDVCKKLKEEKRLAEAALLEQKRQAEEIRNQQEIEKFERKFKPRRKGKDRLDKRQIQKESCGNYKKYSILAVLVCLIGVVMFYINVQTSSTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00217442;
- 90% Identity
- -
- 80% Identity
- -