Basic Information

Insect: Ceratina calcarata
Gene Symbol: -
Assembly: GCA_026724355.1
Location: JAKKRE010000004.1:10271038-10277363[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 4.7 5.8e+02 1.9 0.2 1 23 80 105 80 105 0.91

2 17 0.27 33 5.8 1.2 2 23 118 139 118 140 0.93

3 17 4.8 5.8e+02 1.8 3.7 1 23 146 168 146 168 0.97

4 17 0.03 3.7 8.8 0.5 2 23 174 195 173 195 0.97

5 17 0.0054 0.66 11.1 3.2 2 20 472 490 471 492 0.94

6 17 2 2.4e+02 3.0 1.0 1 23 560 582 560 582 0.82

7 17 0.072 8.8 7.6 0.1 1 23 787 809 787 809 0.94

8 17 0.0014 0.17 13.0 0.5 1 23 817 839 817 839 0.98

9 17 0.14 17 6.6 1.1 2 23 934 955 933 955 0.95

10 17 0.92 1.1e+02 4.1 0.7 3 23 967 987 965 987 0.91

11 17 0.0028 0.34 12.0 0.2 1 23 1064 1086 1064 1086 0.98

12 17 0.031 3.8 8.7 0.3 1 23 1159 1181 1159 1181 0.97

13 17 4.5e-05 0.0055 17.6 0.6 1 23 1187 1209 1187 1209 0.97

14 17 0.0047 0.57 11.3 2.6 1 23 1255 1277 1255 1277 0.97

15 17 0.00076 0.093 13.8 1.7 1 23 1283 1305 1283 1305 0.99

16 17 0.22 26 6.1 2.0 2 23 1393 1414 1392 1414 0.97

17 17 6.9 8.5e+02 1.3 0.3 2 23 1422 1443 1422 1443 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	4.7	5.8e+02	1.9	0.2	1	23	80	105	80	105	0.91
2	17	0.27	33	5.8	1.2	2	23	118	139	118	140	0.93
3	17	4.8	5.8e+02	1.8	3.7	1	23	146	168	146	168	0.97
4	17	0.03	3.7	8.8	0.5	2	23	174	195	173	195	0.97
5	17	0.0054	0.66	11.1	3.2	2	20	472	490	471	492	0.94
6	17	2	2.4e+02	3.0	1.0	1	23	560	582	560	582	0.82
7	17	0.072	8.8	7.6	0.1	1	23	787	809	787	809	0.94
8	17	0.0014	0.17	13.0	0.5	1	23	817	839	817	839	0.98
9	17	0.14	17	6.6	1.1	2	23	934	955	933	955	0.95
10	17	0.92	1.1e+02	4.1	0.7	3	23	967	987	965	987	0.91
11	17	0.0028	0.34	12.0	0.2	1	23	1064	1086	1064	1086	0.98
12	17	0.031	3.8	8.7	0.3	1	23	1159	1181	1159	1181	0.97
13	17	4.5e-05	0.0055	17.6	0.6	1	23	1187	1209	1187	1209	0.97
14	17	0.0047	0.57	11.3	2.6	1	23	1255	1277	1255	1277	0.97
15	17	0.00076	0.093	13.8	1.7	1	23	1283	1305	1283	1305	0.99
16	17	0.22	26	6.1	2.0	2	23	1393	1414	1392	1414	0.97
17	17	6.9	8.5e+02	1.3	0.3	2	23	1422	1443	1422	1443	0.79

Sequence Information

Coding Sequence: ATGTCAGGAAGGCTGCCCCGGTTGCGTGCACTTCGTCCGCGGCCCAAGCAGTTCAAGTCGGAGCACCGTGAAGAAGGTAACCTTAAAGAGGATCCACAGGAAGTCGCGATGAAGGGACACGAGAGCGACGCGGAGGACGTTTCATATATCGTCGAAGAAGACGGCGACGGTGACGACGACGAAGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGAGGATGCCGAAATGGAAAAGTTACGAGTGTAAAACGTGTAAGCCTCCGAAGCCTTTGCCGAGTCTCAAGGCGTATCTCGATCATCTGAAAAAAGAGCATAAGCAAAAGGGGAAATTTGCTCGTGACACTGGGAACCGATGCTCCATGTGCTCGTACGTTGCACTGAACTCCAGGGATCTAGAGAGTCATCAAAGAGTGCACCATTTGAAAAGGAGGTTTTTCAGATGTGCTAAATGTTCTTACGTGACCCATGTACGTGCTCGTTACACGAAGCATGTCAAGTATCACTCGATGCCAATGATCAAGTGCGATGCCTGTGATTTTCGAACACCGTACAAGTGGAATTTAGATAGGCACACCAGAAATCATGGTGGAGGTGGAGCCTTCCAATGCAGTGCTTGTAATTTTACAGCCGACATCAGACAGAGTTTAACGGTACACGAAACTAATCATCACGAACCTCCTGTAGGTCAGACGAATCGAAAATCCAACGCAGCGTTCGAACGAAGACCGAGAAACAGTCCTAAACGTTACAATCAGGTGGGTGCAAGCGATTTTCGTGACTCGCTGCATATATCCTCGAGCACGACGCTGTCGATTAGCTCCGGGGATCCATACGTTTCTGATCAATCTATGGAAGATAAGAGAAGCGCGTTAGCCAACGCGGAGTGTATAGCGTTGAAATGCGAAGAGAAAGGCTGCCAATTTATCACCGCGTGGGATTCGGAGATGCAGCGACATTTGGCAGAATGTCACGCTCCGATCACGCCGAGCAAGTCCAGGAAACCACTGCCAATGCTGATACCTTTAGCTCCTTCGAAAGCGAATAACGCTACCGTCGGCGGTCCTCCGACGACGTTGCTGAAAGTTCCGCGTGTCAGGGTAAGACCGGAACTCGCGCAAATCGCAAGAGACACGGAACTGGCCAAGTTATACGGGAATAAAGAAGCCGGGAACTTAAAGAAGGATGCGAGTAACGCGGCAGATTTGTTTGAAAAAAAGAACGCGTCGTTCTTTGATAAGCTTAAGGAAAAGCTTACCACGACAGCGTCAATAAATAACGGGGTGGCCGAGGTAGCTGTAAGTACCACGAACGATATGAAATGCTGGTGTACATTTAAAGCTAGTAGCATGGAAGAGCTGGCTTGTCACAAACAAACACACCACACTGCTCTCAGTGTCTCTGTGGGCACGACGCGTTGCCCGAGGTGTCGGAGACGGTGCAAAAGCTCGACTGATCTCCAAAAGCATATGACGCAGTGTCGTCGCTCGGCAGGCAACGATACGTCCATACACAATAGCTTAGAAAAATTATCAAATTGTTCAGAACTCCGTGTGACCTCGTATCGCGGCGAATACGCATTCCCAGCGCAAACGGATTGGGACGTTAATACCGGCGGGCCGAGTTCTTCTGGATCATCGGTTGAAGGTTCCTCGACGCATCCAAGTGGCCGGCGGGTATTCAAATGCCCGCACTGTCCATTTTGGGCATCCACTGCGAGTCGTTTTCATGTTCATATTGTCGGTCATTTAAATCGGAAGCCATTCGAGTGTTCCCTGTGCGCGTATCGCTCTAACTGGCGATGGGACATCACTAAACATATTAAACTTAAAGCAGTTAAAGATCCGCTTCATACGACTGCCAGGGTACTTATGACGGATGAAACAGGACGACGGAATTATTCCAAATATAACAAATATTTATCACAGGTAGAGCAGCAGTGGGAGGATCAAAGTATGGAAGAACGTAGCGTGGAGGAGATCAATTCCGACGAACCGCCGACCAAATTGTTTGTTATGAACAGCAGCGATTATCTGGAAACGCCAGAGCTAACGTCCACTCCGATCTCGGCCGTATCCACCAGCGAAGGAGGCCATAATTCAATCAATATCGGGCTGAGACCGCCGCCACCTCTCAAAGCTGCCGCAAGAAGCAAAGGGCAGTCTTTGCTCAAGAACAATCTGATCTCCCCTCAAAGCGGTTTGAGCAGCTCCGCCTCTTCCTCGGTCACCGAGGACAATAAACGCACCATGTGGAAGTGTAAGCGATGTAACTTTAGACATTCCAACAGAGAGACCGTCTCGGTGCACGTCAAGTCTCACAGCGATTCGGAACAACGTCACGGAGAAGAAAAGAATGTGTTCAGTTGCGGAGATTGTCCGTTCTCTGCGTCGGATGCAGCAGCTCTGTCGACGCACAGAGTTCATCATCGTCCGAACCTAGAAGCTATTTTCAAATGTTACTTGTGTCCGTACTACGTCAGTACGAAATCGGAACTTTTGGATCACGTCAGACTACACGGGGAAGAGCTCGCCGTTGTGCATCAGCAAAGTACGGATCACAATCTCTCGGTCAAGTCGAAAGCGCGTTCCTCTTTGAGCACCAACAGTTCTAATCGGATGAAACAGGAGAAGCCGGCCGAGCAGGTGATTCACATAACGACTCAGAACAACGTGACATCGTTCACGAACGCTTCGAAGAACTCCGGAGCCCCGCCGCCGTTGCTTCTGGATACTCGAGCACTGCCAGAAGCCCCGTTAGTATGGGTATCCCGGCCGGACGGTACGCTGACCAAGATGTTGAAATGCCGCCACTGCCCGTTCGTGTCCTCGCGGCGCGCAGAAGTTCGAGACCACGAGACCATGCACTTAGACGCGCCCAGCAACGGTCCCGTGATCGCCTGCACGGACTGCAGTTTCACTTGTACGCGACGCGAGGTGATGGTCGCGCACTCGGACATGCATTCCGGTTCCCTAGGCACGGTCCATTGTTTGGTGGACGAGACCAGACCCGACTCGCAGCAATTGAGCGACTTGTCCACGCTCCTCGGCTTGACGCATTCCCCTGTGCTAGGCGCAGAACCTGACTTACGAGATCTAAGACTCGTGCACTGTTGCAGCAAATGTCCGGCGCGATTCCTCTGCGAGAAAGAATTGAGGATTCACTTGAGATACCACTCGACGGAGCTGGCTTATTCATGCCAGTGGTGTTCGTACGCGGCTAGGCAACCGGCTCACCTTCTGGCCCATCAGAAGGCACATTCCACGGAGTATCAGGAACGTACAAAGTACTTGCTGTCCCTGTATGGTCACTCGCAGCGGTATCCGCCACCAACGACCGCCTGCGTCGAGGCGAACGAGCAGGAGTCGAGCAACTCGGCTCCCACCGTCGCGTGGATCGTGGTCGAGATCACGGAGACCGTGAACAACAGTTTCGACAACGCGAGCGACGCTAATCAACGGACCGGGAATCAGGTGTTCACCTGCGCTAAGTGTCCGGCGCGTTACTTCAAGCTGGACGCTCTCGAGTATCACATGACGCTGCATGGATCGAACAACAGATTCAAGTGCACCGAGTGCGACTACTCGTCAAAGACTGCGCAAAACCTCGTGAAGCATCAGGTGGTTCACCGTCGTCAGAACGAAACGACCGAAATGGTGAATCTGTCGCCACCGCCCGATCCACAGTTCGGACTGTTTATGCGCGGCAATCCTAACTTCGTCTATCCCGGTTACTTTCGAAATGGTCGCCTGAAGGAGAAGCGGTACAAGTGTCACAAGTGTCCGTCCGCTTTCGAAAAACGGGAACAGTACAGGGTACATTTGACTCTACACGGCGCGAAACAGAGATACCGTTGCGACACGTGCGACTACTCCGTCAAGTATTACGCGAATTACATACAGCATCTGAAGAAGCACCAGGCGAACGCCGAGGCGCAGGCTTCGCGTAGACAGTTCGAGGACGACACCATCAACGTCGATAGCCACGTTCAGGGTTCCTTCTCGCGATCGAGCAAGACTTTGAAACTGTCCAGCAATTCGACGGCTAACGCGTCTGCAAACGGTACGTCGGTGTCGAATTTCGCCGCGGCGCAGACTTCGAATCAGGACAGGCAGTCCATGATACTGCTGCAGAAGAAGGGGATGCTCTCGCCCTCGAACGAAGAGCCGGAGACGTTGCGCTGTCAGAGCTGCCCGTTCTCCACGTGCGACAAGGACGCGATGGACGCTCACAAACGTCGCCACGGTATCGAGCGGATGACACCGTCTTGTCCACACTGCGATTACATACCACGAAAGGACGAGAACGTCGGCGAACATATCAGGCTACACTTTACGAGACTTTACAAACCGGAATCCTATCTTATCATAGAACTGCTCGCGTTAACGATGAAGAAGATCAATACTAACGGAAGGAGGAGAAACAAAAAGCTGCCGAGTTACTTTTCAAAGAGTGAAACGAAACACCTGATCGTTTAA
Protein Sequence: MSGRLPRLRALRPRPKQFKSEHREEGNLKEDPQEVAMKGHESDAEDVSYIVEEDGDGDDDEEEEEEEEEEEERMPKWKSYECKTCKPPKPLPSLKAYLDHLKKEHKQKGKFARDTGNRCSMCSYVALNSRDLESHQRVHHLKRRFFRCAKCSYVTHVRARYTKHVKYHSMPMIKCDACDFRTPYKWNLDRHTRNHGGGGAFQCSACNFTADIRQSLTVHETNHHEPPVGQTNRKSNAAFERRPRNSPKRYNQVGASDFRDSLHISSSTTLSISSGDPYVSDQSMEDKRSALANAECIALKCEEKGCQFITAWDSEMQRHLAECHAPITPSKSRKPLPMLIPLAPSKANNATVGGPPTTLLKVPRVRVRPELAQIARDTELAKLYGNKEAGNLKKDASNAADLFEKKNASFFDKLKEKLTTTASINNGVAEVAVSTTNDMKCWCTFKASSMEELACHKQTHHTALSVSVGTTRCPRCRRRCKSSTDLQKHMTQCRRSAGNDTSIHNSLEKLSNCSELRVTSYRGEYAFPAQTDWDVNTGGPSSSGSSVEGSSTHPSGRRVFKCPHCPFWASTASRFHVHIVGHLNRKPFECSLCAYRSNWRWDITKHIKLKAVKDPLHTTARVLMTDETGRRNYSKYNKYLSQVEQQWEDQSMEERSVEEINSDEPPTKLFVMNSSDYLETPELTSTPISAVSTSEGGHNSINIGLRPPPPLKAAARSKGQSLLKNNLISPQSGLSSSASSSVTEDNKRTMWKCKRCNFRHSNRETVSVHVKSHSDSEQRHGEEKNVFSCGDCPFSASDAAALSTHRVHHRPNLEAIFKCYLCPYYVSTKSELLDHVRLHGEELAVVHQQSTDHNLSVKSKARSSLSTNSSNRMKQEKPAEQVIHITTQNNVTSFTNASKNSGAPPPLLLDTRALPEAPLVWVSRPDGTLTKMLKCRHCPFVSSRRAEVRDHETMHLDAPSNGPVIACTDCSFTCTRREVMVAHSDMHSGSLGTVHCLVDETRPDSQQLSDLSTLLGLTHSPVLGAEPDLRDLRLVHCCSKCPARFLCEKELRIHLRYHSTELAYSCQWCSYAARQPAHLLAHQKAHSTEYQERTKYLLSLYGHSQRYPPPTTACVEANEQESSNSAPTVAWIVVEITETVNNSFDNASDANQRTGNQVFTCAKCPARYFKLDALEYHMTLHGSNNRFKCTECDYSSKTAQNLVKHQVVHRRQNETTEMVNLSPPPDPQFGLFMRGNPNFVYPGYFRNGRLKEKRYKCHKCPSAFEKREQYRVHLTLHGAKQRYRCDTCDYSVKYYANYIQHLKKHQANAEAQASRRQFEDDTINVDSHVQGSFSRSSKTLKLSSNSTANASANGTSVSNFAAAQTSNQDRQSMILLQKKGMLSPSNEEPETLRCQSCPFSTCDKDAMDAHKRRHGIERMTPSCPHCDYIPRKDENVGEHIRLHFTRLYKPESYLIIELLALTMKKINTNGRRRNKKLPSYFSKSETKHLIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00762862;
90% Identity: -
80% Identity: -