Ccal021851.1
Basic Information
- Insect
- Ceratina calcarata
- Gene Symbol
- bab1
- Assembly
- GCA_026724355.1
- Location
- JAKKRE010000001.1:1832082-1834070[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.7e-06 0.0098 16.1 0.0 8 38 208 238 201 244 0.71 2 4 5.2e-11 1.1e-07 32.0 0.0 5 39 255 288 252 295 0.85 3 4 0.12 2.5e+02 2.0 0.0 21 34 322 335 308 340 0.80 4 4 1.2e-11 2.5e-08 34.0 0.0 4 39 366 401 363 407 0.92
Sequence Information
- Coding Sequence
- ATGTCAGATATTGTCAACCAACATGAGATTAATCATAGTTACTGGTTCAAATGGAACGATTATCAGAGTCATTTGTCCGACGTGGTCAGACAATTGTTGGAGGAGGACTGCATGGTGGACGTTACCCTGGCTGCAGCTGGGGAACGTATTCATGCCCATCGGATAGTTTTATGCGCTTGCAGCACCTTATTTCGAGATATACTAAGTCAAGTGAACGAGGATCATCCAACAATAATATTAAGCGATATATCTGCTCAGGACATAAAGTCCATCATAGAATTTACTTATCATGGAGAAGTACGGGTTCCAGTTGATAATATCAGTAGCCTGTTGGAAGCAGCACGCTCATTAAAAATCTGTGGTCTTATAGAGATCGATGGGCTTGACGATTTTGGATCTTTTGAAAACAGTAAAGATTTTAATGAGAGCACGGAAGAGCCAATGACTGTAATTAGTGAAGGAGAAGAGAATGTTATCGATGCACTGCAACAAGATTATGAGGACTTGGAGGATCAGCAAAAGGCAGAAGAAGAGACAACTGAAAATTGTACTTTGAATAAGAAAAAGAAACGCAGACGCGATACAAGCAAAAGAGAATACAATGATGATATGCTAGCGTCGGCGATTAACGATTTGAAATTGGGTCAAACGTTGATAGAAGCTTCGACTAAACACAATATACCGCGTTCGACTTTGTACATGCGTGCAAAAGCATTGGGTATACATCTAAATGCTTCGAGGAACGAATATCCCGCAGAGTGCATGAAAGCTGCTATAAACGCGGTGATCGGCGGTTCGAGTTTGCAGCACGCATCGGAAATGTTCAGTATACCGAAGACCGTATTATGGCGGAGGATACAGAAAGAAGGATATCAGATATTACGTTCTGAAATGAAAAGATCTTACGGTTCGGACAAACGGGAAGCCGCGGTCAAGGCTTTGGAAAGGGGAGAAAATCTTACGAAAGTTGCGCTTGAGTTTAAAATTCCGAAAACTACTTTGTTTCGAGACAAAGCTCGATTAGTGGACGAGGGAAAGCTACCTTTATCGTATTGGAAGAAGCGTAAAACGGAGAACGAAGAATTGAAGAAGTCTCGTTTAGAGGAAGCGGTCGCTGCTTGCAAAGGTGGAAAAATGTCGCAGGCAATGGCGTCGATGACTTACCACATCCCAAAGACGACGATATGGAGACGTCTTCAGCAGGATGGTAAAAAGTCGGAACGATCTTTGAACTCAAGGAAACAGAGAACAGCGGATTCGAAAAACAACGCGGAAGCGAAGATTCACGGACACGAGGAATCTGATTTCGCCTACTGCGAGGTATCGTCCGAAATACCCATAACTTACATCGATGAGAACATACCTGAAGATTCTGTGATAATATTGACGGCAGAAGATATGGATGGGCTCAATTTAGAGGAAGGACGACAAATTATTGTTAACTCGGAATCAGGCCAAGAATATGTTCCCTGCGCTATAAGTATCGAAGAGAATTCAAATTACTCCCAGACGGAAAGTTAG
- Protein Sequence
- MSDIVNQHEINHSYWFKWNDYQSHLSDVVRQLLEEDCMVDVTLAAAGERIHAHRIVLCACSTLFRDILSQVNEDHPTIILSDISAQDIKSIIEFTYHGEVRVPVDNISSLLEAARSLKICGLIEIDGLDDFGSFENSKDFNESTEEPMTVISEGEENVIDALQQDYEDLEDQQKAEEETTENCTLNKKKKRRRDTSKREYNDDMLASAINDLKLGQTLIEASTKHNIPRSTLYMRAKALGIHLNASRNEYPAECMKAAINAVIGGSSLQHASEMFSIPKTVLWRRIQKEGYQILRSEMKRSYGSDKREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVDEGKLPLSYWKKRKTENEELKKSRLEEAVAACKGGKMSQAMASMTYHIPKTTIWRRLQQDGKKSERSLNSRKQRTADSKNNAEAKIHGHEESDFAYCEVSSEIPITYIDENIPEDSVIILTAEDMDGLNLEEGRQIIVNSESGQEYVPCAISIEENSNYSQTES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00118108;
- 90% Identity
- iTF_00303207;
- 80% Identity
- iTF_00303207;